Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1226.1 645 100.0
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1171.4 631 97.8
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1167.5 631 97.3
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1155.2 631 95.9
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1151.7 631 96.2
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1151.7 631 96.2
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1119.0 631 93.8
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1112.8 619 93.7
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 0.0e+00 1105.5 631 92.2
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1100.1 631 91.9
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1098.6 631 91.6
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1097.8 631 91.8
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 4.8e-301 1037.3 579 93.4
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 8.5e-290 1000.0 664 82.7
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 5.2e-287 990.7 631 82.4
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 1.1e-241 840.1 619 69.6
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 1.3e-240 836.6 622 69.6
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 3.6e-240 835.1 603 70.6
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 5.3e-239 831.2 603 71.5
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 1.5e-238 829.7 619 70.1
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.3e-237 826.6 602 71.1
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 1.7e-237 826.2 607 69.9
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 4.2e-236 821.6 619 68.7
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 4.2e-236 821.6 619 68.7
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 7.1e-236 820.8 609 70.4
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 6.7e-234 814.3 631 68.3
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 1.1e-233 813.5 601 69.4
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 6.2e-232 807.7 605 68.1
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 1.4e-231 806.6 624 67.9
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 2.0e-230 802.7 606 69.6
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 4.9e-229 798.1 626 68.2
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 1.4e-228 796.6 624 67.3
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 4.6e-227 791.6 624 66.8
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 1.3e-226 790.0 606 67.5
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 5.1e-226 788.1 624 66.5
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 6.7e-226 787.7 625 67.4
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 1.1e-225 786.9 617 67.1
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 1.1e-225 786.9 617 67.1
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 2.5e-225 785.8 624 67.0
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 3.3e-225 785.4 624 66.3
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 2.1e-224 782.7 624 66.3
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 6.2e-224 781.2 616 67.5
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 6.2e-224 781.2 625 65.9
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 1.1e-223 780.4 617 67.1
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 2.4e-223 779.2 616 67.4
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 3.4e-222 775.4 624 66.5
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 1.0e-221 773.9 617 67.3
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 1.0e-221 773.9 619 66.1
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 3.8e-221 771.9 618 66.7
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 1.9e-220 769.6 628 65.9
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 3.2e-220 768.8 619 66.9
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 3.3e-217 758.8 619 65.9
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 9.6e-217 757.3 613 66.2
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 1.3e-216 756.9 617 66.8
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 1.6e-216 756.5 631 64.5
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 1.3e-213 746.9 619 65.4
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 1.7e-213 746.5 621 64.4
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 5.0e-213 745.0 631 64.5
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 4.2e-212 741.9 619 65.3
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 2.7e-211 739.2 607 65.6
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 4.6e-211 738.4 620 61.9
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 7.9e-211 737.6 619 62.8
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 1.5e-209 733.4 620 63.1
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 7.4e-209 731.1 617 63.0
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 9.7e-209 730.7 606 64.5
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 1.6e-208 729.9 619 62.4
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 1.1e-207 727.2 605 62.1
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 3.1e-207 725.7 619 62.8
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 9.1e-207 724.2 606 64.0
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.2e-206 723.8 606 64.0
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 5.9e-206 721.5 618 62.5
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 6.5e-205 718.0 619 62.5
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 8.5e-205 717.6 575 66.1
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 1.4e-204 716.8 619 62.0
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.7e-200 702.2 585 64.6
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 6.9e-199 698.0 627 59.6
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 4.7e-195 685.3 618 60.5
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 1.8e-194 683.3 679 54.6
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 8.8e-194 681.0 620 59.4
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 7.7e-190 667.9 606 60.9
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.0e-189 667.5 606 60.9
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 1.3e-184 650.6 336 97.9
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 1.6e-174 617.1 559 60.1
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 1.8e-170 603.6 618 56.3
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 1.6e-163 580.5 540 57.2
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 2.6e-161 573.2 631 50.7
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 6.4e-160 568.5 606 50.2
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 9.2e-159 564.7 640 48.6
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 1.7e-157 560.5 496 60.7
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 5.6e-156 555.4 532 57.9
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 9.5e-156 554.7 540 59.3
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 2.3e-146 523.5 501 55.3
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 4.6e-142 509.2 576 51.7
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 4.0e-130 469.5 633 45.5
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 4.6e-126 456.1 390 60.8
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 7.1e-111 405.6 417 55.4
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 3.7e-99 366.7 488 43.6
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 2.1e-86 324.3 291 58.4
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 4.5e-81 306.6 242 69.0
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 7.2e-63 246.1 233 54.1
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 2.5e-55 221.1 165 73.3
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 1.4e-53 215.3 125 90.4
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 5.2e-53 213.4 132 84.1
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 2.6e-52 211.1 631 27.9
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 1.1e-42 179.1 140 66.4
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 2.6e-36 157.9 136 56.6
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 2.2e-35 154.8 119 65.5
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 1.1e-31 142.5 214 39.3
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 8.1e-30 136.3 139 59.0
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 6.9e-13 80.1 57 73.7
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.6e-09 68.9 74 44.6
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 1.6e-09 68.9 71 50.7
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 2.1e-09 68.6 71 50.7
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 1.9e-07 62.0 58 50.0
Pp3c17_5950 Physcomitrium patens HOM05D005389 ORTHO05D316153 1.9e-07 62.0 56 53.6


User provided reference genes

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