Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 4.5e-40 167.5 89 100.0
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 4.2e-38 161.0 92 95.7
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 4.2e-38 161.0 92 95.7
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 4.2e-38 161.0 92 95.7
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.0e-36 156.4 93 94.6
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 1.0e-36 156.4 93 94.6
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 5.3e-33 144.1 93 89.2
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 4.5e-32 141.0 92 89.1
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 5.5e-30 134.0 94 86.2
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 8.0e-29 130.2 94 81.9
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 2.3e-28 128.6 94 81.9
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 8.8e-28 126.7 94 81.9
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 3.3e-14 81.6 80 61.2
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 7.2e-14 80.5 85 63.5
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 7.2e-14 80.5 82 67.1
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.1e-13 79.0 55 80.0
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 4.7e-13 77.8 100 61.0
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 8.0e-13 77.0 92 59.8
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 2.3e-12 75.5 85 64.7
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 2.3e-12 75.5 85 64.7
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 2.3e-12 75.5 85 64.7
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 2.3e-12 75.5 85 64.7
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 2.3e-12 75.5 85 64.7
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.4e-11 71.6 92 53.3
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.3e-10 69.7 83 59.0
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 2.4e-09 65.5 82 53.7
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.1e-09 65.1 81 53.1
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 1.2e-08 63.2 61 62.3
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 4.5e-08 61.2 61 60.7
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 4.5e-08 61.2 58 60.3
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.0e-07 60.1 85 52.9
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.0e-07 60.1 78 53.8
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.3e-07 59.7 66 62.1
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.7e-07 59.3 83 50.6
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 2.3e-07 58.9 58 60.3
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.9e-07 58.5 84 53.6
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.9e-07 58.5 64 57.8
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 5.0e-07 57.8 78 51.3
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 5.0e-07 57.8 56 64.3
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 6.6e-07 57.4 83 54.2
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 6.6e-07 57.4 65 61.5
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 6.6e-07 57.4 57 61.4
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 8.6e-07 57.0 54 63.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 8.6e-07 57.0 69 52.2
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 8.6e-07 57.0 44 61.4
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 8.6e-07 57.0 62 58.1
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 8.6e-07 57.0 66 63.6
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.1e-06 56.6 74 54.1
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.1e-06 56.6 81 48.1
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.1e-06 56.6 52 67.3
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.5e-06 55.5 73 58.9
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 2.5e-06 55.5 57 59.6
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 3.3e-06 55.1 74 52.7
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.3e-06 54.7 65 53.8
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.3e-06 54.7 74 52.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 7.3e-06 53.9 69 55.1


User provided reference genes

Program Settings