Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2003.4 1082 100.0
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1740.7 1139 85.3
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1723.4 1198 81.1
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1715.3 1136 83.3
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1704.1 1137 82.8
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1704.1 1137 82.8
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1699.9 1173 81.1
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1680.2 1187 79.8
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1678.7 1187 79.7
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1678.7 1187 79.7
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1670.2 1181 79.0
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1664.4 1200 77.8
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1645.9 1076 83.5
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1626.7 1163 78.6
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1624.0 1137 79.9
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1599.3 1169 76.8
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1589.7 1133 78.5
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1584.3 1164 76.9
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1516.9 1100 76.6
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1489.2 1077 75.4
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1330.1 1042 68.6
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1327.8 1041 68.3
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1327.8 1049 68.7
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1324.7 1052 67.9
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1316.2 1069 66.6
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1314.3 1052 67.2
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1306.6 1155 63.0
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1306.2 1176 63.6
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1297.7 1161 62.4
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1296.2 1166 62.2
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1295.8 1049 67.6
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1295.4 1151 63.6
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1295.0 1150 62.9
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1295.0 1077 65.7
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1291.2 1087 64.7
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1290.8 1039 67.5
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1290.8 1072 66.0
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1290.0 1154 62.9
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1289.6 1149 63.2
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1287.3 1149 62.8
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1284.6 1140 64.4
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1281.9 1164 62.5
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1278.8 1158 61.5
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1277.3 1038 66.8
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1272.7 1078 64.4
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1271.1 1078 64.3
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1268.1 1041 66.0
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1262.3 1040 66.2
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1261.1 1123 62.5
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1260.4 1164 61.1
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1259.2 1069 64.9
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1259.2 1157 61.3
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1258.4 1077 64.2
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1257.3 1166 61.1
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1256.9 1148 61.7
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1256.5 1078 63.6
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1255.7 1054 65.7
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1255.0 1077 64.0
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1253.0 1078 63.8
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1248.8 1049 65.1
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1247.3 1080 63.8
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1246.9 1037 65.7
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1246.5 1050 64.5
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1245.7 1079 63.6
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1242.3 1141 62.0
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1241.9 1075 64.4
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1236.9 1074 63.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1235.3 1054 64.5
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1234.2 1051 64.0
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1234.2 1158 60.4
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1232.2 1070 63.9
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1229.5 1073 62.7
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1228.4 1051 63.8
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1228.4 1073 62.9
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1226.8 1054 64.2
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1224.2 1068 63.3
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1223.0 1054 64.1
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1222.6 1055 64.1
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1219.1 1156 59.9
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1215.7 1068 63.5
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1209.5 1065 62.9
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1208.4 1159 59.4
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1206.0 1101 60.4
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1203.7 1082 61.6
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1202.6 1094 61.2
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1201.0 1068 62.7
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1195.6 1158 59.2
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1192.6 1050 62.2
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1185.6 1078 61.6
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1178.7 1078 61.3
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1176.4 1159 58.0
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1161.0 1131 58.4
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1149.0 1086 58.5
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1147.5 1079 60.1
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1139.0 1059 61.1
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1121.7 1181 56.7
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1117.4 1073 59.0
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1113.2 1128 56.9
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1105.5 1070 59.1
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1102.0 1151 55.1
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 2.0e-299 1032.7 1089 54.1
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 2.7e-296 1022.3 779 69.2
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 1.8e-279 966.5 1046 53.5
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 3.0e-271 939.1 700 70.1
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 2.3e-231 806.6 1060 45.1
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 4.9e-229 798.9 998 46.6
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 8.6e-226 788.1 1056 44.3
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 4.2e-225 785.8 983 46.6
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 2.3e-218 763.5 785 56.4
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 2.8e-208 729.9 1065 41.9
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 5.2e-191 672.5 1036 40.7
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.9e-157 560.5 589 54.5
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 3.3e-145 520.4 525 57.3
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.8e-128 464.2 927 31.8
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 5.0e-117 426.8 358 62.6
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 6.8e-114 416.4 1005 32.7
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 5.6e-108 396.7 328 67.4
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 2.4e-66 258.5 980 24.8
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 3.4e-65 254.6 858 26.3
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 2.2e-56 225.3 1032 25.4
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 8.2e-43 180.3 181 56.9
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.1e-42 178.3 161 62.1
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.2e-41 176.4 161 61.5
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.2e-41 176.4 311 40.8
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.5e-41 176.0 322 40.7
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.5e-41 176.0 322 40.7
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.9e-33 147.5 134 61.9
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.7e-27 129.4 122 58.2
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 8.5e-24 117.1 140 51.4
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 2.0e-20 105.9 96 59.4
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.3e-20 105.1 71 74.6
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.4e-20 104.0 97 61.9
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 2.2e-19 102.4 61 78.7
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.2e-19 102.4 95 63.2
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 7.0e-18 97.4 77 64.9
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 7.0e-18 97.4 77 64.9
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 2.0e-17 95.9 72 65.3
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.5e-15 89.0 64 70.3
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 3.2e-15 88.6 57 78.9
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.2e-15 88.2 68 64.7
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 5.2e-13 81.3 61 67.2
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 4.1e-10 71.6 80 53.8
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 9.4e-07 60.5 160 26.2
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.2e-06 60.1 175 26.3
BcaB02g08331 Brassica carinata HOM05D004602 ORTHO05D014120 1.6e-06 59.7 61 52.5
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 2.7e-06 58.9 129 27.9
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 4.7e-06 58.2 135 26.7
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 4.7e-06 58.2 135 26.7
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 6.1e-06 57.8 158 25.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 8.0e-06 57.4 155 26.5


User provided reference genes

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