Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.7e-185 652.5 325 100.0
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 8.5e-129 464.2 240 97.1
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 8.5e-129 464.2 240 97.1
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 8.5e-129 464.2 240 97.1
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 5.2e-126 454.9 240 94.2
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.6e-122 443.4 260 86.2
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 3.2e-120 435.6 240 90.4
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 3.6e-119 432.2 240 89.2
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 6.1e-119 431.4 241 90.0
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.2e-117 427.2 243 88.9
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.6e-109 399.4 262 77.9
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.1e-107 394.0 243 81.9
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.8e-107 393.3 243 81.1
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.4e-107 392.9 242 81.4
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.0e-107 391.3 243 80.7
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.3e-105 387.1 240 81.2
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 2.9e-105 386.0 242 79.8
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 2.8e-103 379.4 240 78.8
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 3.6e-103 379.0 193 96.9
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 2.0e-101 373.2 241 80.9
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 1.1e-99 367.5 240 74.6
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.1e-99 367.5 240 74.6
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.4e-99 367.1 239 75.3
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.5e-98 362.5 236 73.3
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 7.8e-98 361.3 240 73.3
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 7.8e-98 361.3 240 73.3
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 6.6e-97 358.2 240 72.5
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 1.9e-96 356.7 283 61.8
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.8e-95 352.8 322 58.4
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 8.0e-95 351.3 258 67.1
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 4.0e-94 349.0 243 70.8
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 4.0e-94 349.0 243 70.8
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 6.8e-94 348.2 261 66.7
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 8.9e-94 347.8 238 71.8
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 8.9e-94 347.8 238 70.2
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 1.2e-93 347.4 236 69.9
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.5e-93 347.1 258 67.1
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 2.6e-93 346.3 244 71.3
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.4e-93 345.9 261 65.9
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.4e-93 345.9 261 65.9
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 4.4e-93 345.5 240 69.2
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 7.5e-93 344.7 236 69.5
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.7e-92 343.6 240 69.2
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.7e-92 343.6 240 69.2
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.7e-92 343.6 258 65.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.2e-92 343.2 258 65.1
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.9e-92 342.8 236 70.3
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 2.9e-92 342.8 240 68.8
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.7e-92 342.4 238 68.5
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.7e-92 342.4 238 69.3
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 3.7e-92 342.4 238 69.3
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 6.4e-92 341.7 238 69.7
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.4e-91 340.5 238 69.3
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.4e-91 339.7 236 68.6
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 2.4e-91 339.7 236 69.5
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 3.2e-91 339.3 236 67.8
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 4.1e-91 339.0 236 66.5
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.2e-90 337.4 271 62.4
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.2e-90 337.4 236 68.2
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 2.7e-90 336.3 236 65.7
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 2.7e-90 336.3 236 68.2
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 2.7e-90 336.3 236 67.4
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 4.6e-90 335.5 236 67.4
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 7.8e-90 334.7 238 67.6
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 1.3e-89 334.0 238 66.8
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 1.3e-89 334.0 263 64.3
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.7e-89 333.6 238 67.6
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 3.9e-89 332.4 254 62.6
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 5.0e-89 332.0 238 68.1
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 8.6e-89 331.3 236 67.4
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.1e-88 330.9 236 66.9
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 1.1e-88 330.9 273 60.4
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 1.5e-88 330.5 261 62.5
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.9e-88 330.1 237 67.9
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 1.9e-88 330.1 232 69.4
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 2.5e-88 329.7 243 65.0
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 4.3e-88 328.9 236 64.8
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 4.3e-88 328.9 243 66.3
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 7.3e-88 328.2 237 65.4
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 7.3e-88 328.2 236 66.1
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 9.5e-88 327.8 236 66.1
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 1.2e-87 327.4 238 66.8
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.6e-87 327.0 290 57.9
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.6e-87 325.9 236 65.3
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 8.1e-87 324.7 240 67.1
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 1.1e-86 324.3 236 64.4
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.8e-86 323.6 261 62.1
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.3e-86 323.2 261 62.5
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 8.9e-86 321.2 261 62.1
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 1.7e-84 317.0 228 67.5
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 3.7e-84 315.8 244 63.9
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 4.9e-84 315.5 228 67.1
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 6.4e-84 315.1 228 66.7
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.1e-83 314.3 238 63.0
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 3.2e-83 312.8 243 61.7
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 4.1e-83 312.4 287 55.4
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 9.2e-83 311.2 222 68.0
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 1.6e-82 310.5 228 67.1
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 4.6e-82 308.9 246 62.2
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 7.8e-82 308.1 253 61.3
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.3e-81 307.4 238 61.3
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.3e-81 306.6 238 60.5
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 5.1e-81 305.4 236 58.9
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 1.9e-80 303.5 233 62.7
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 3.3e-80 302.8 231 60.2
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 3.6e-79 299.3 235 62.6
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 6.2e-79 298.5 275 55.6
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.4e-78 297.4 242 59.5
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 2.3e-78 296.6 242 60.7
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 2.3e-78 296.6 229 60.3
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 3.1e-78 296.2 254 57.9
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 6.4e-76 288.5 237 60.8
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 8.4e-76 288.1 236 58.9
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 2.4e-75 286.6 229 61.6
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 5.1e-73 278.9 234 57.7
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.5e-72 277.3 236 56.8
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 4.7e-71 272.3 239 57.7
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 8.1e-71 271.6 243 53.9
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 9.3e-67 258.1 241 52.3
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 3.5e-66 256.1 313 44.1
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 2.5e-64 250.0 244 49.6
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.5e-61 240.7 242 52.1
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 7.1e-51 205.3 248 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.9e-48 197.2 246 43.1
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 2.8e-47 193.4 98 99.0
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.7e-47 193.0 241 44.4
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 4.8e-47 192.6 248 42.3
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 8.1e-47 191.8 247 42.1
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 6.9e-46 188.7 111 84.7
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 3.4e-45 186.4 246 40.2
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 1.1e-32 144.8 238 39.1
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 9.1e-30 135.2 121 53.7
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 6.1e-26 122.5 90 64.4
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 1.0e-20 105.1 61 85.2
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 2.5e-11 73.9 201 28.4
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 1.0e-09 68.6 64 56.2
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 7.5e-08 62.4 51 60.8
BcaB08g35323 Brassica carinata HOM05D000975 ORTHO05D003128 3.1e-06 57.0 44 65.9


User provided reference genes

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