Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07290 Brassica carinata HOM05D002113 ORTHO05D002124 6.1e-82 307.4 149 100.0
BcaC03g16042 Brassica carinata HOM05D002113 ORTHO05D002124 9.8e-64 246.9 160 81.9
C02p38010 Brassica napus HOM05D002113 ORTHO05D002124 1.2e-58 229.9 178 71.9
BolC2t09817H Brassica oleracea HOM05D002113 ORTHO05D002124 1.2e-58 229.9 178 71.9
BraA02t07406Z Brassica rapa HOM05D002113 ORTHO05D002124 5.2e-57 224.6 178 71.3
A02p24140 Brassica napus HOM05D002113 ORTHO05D002124 8.9e-57 223.8 178 71.3
BcaB01g02196 Brassica carinata HOM05D002113 ORTHO05D002124 3.0e-52 208.8 179 68.2
C09p00440 Brassica napus HOM05D002113 ORTHO05D002124 8.1e-34 147.5 181 51.4
A09p00430 Brassica napus HOM05D002113 ORTHO05D002124 3.8e-31 138.7 185 50.8
BcaB01g02257 Brassica carinata HOM05D002113 ORTHO05D002124 1.3e-28 130.2 185 50.8
BraA09t35717Z Brassica rapa HOM05D002113 ORTHO05D002124 2.3e-28 129.4 181 48.1
Thhalv10029351m.g Eutrema salsugineum HOM05D002113 ORTHO05D002124 4.2e-22 108.6 136 48.5
AL6G52930 Arabidopsis lyrata HOM05D002113 ORTHO05D002124 1.3e-20 103.6 150 44.0
CARHR248700 Cardamine hirsuta HOM05D002113 ORTHO05D002124 3.9e-20 102.1 144 42.4
Carub.0006s3672 Capsella rubella HOM05D002113 ORTHO05D002124 1.1e-19 100.5 153 41.8
Carub.0008s0628 Capsella rubella HOM05D002113 ORTHO05D002124 1.3e-18 97.1 153 41.2
BcaC02g07051 Brassica carinata HOM05D002113 ORTHO05D002124 5.3e-09 65.1 117 37.6
Phvul.008G073100 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 1.3e-07 60.5 123 34.1
PGR031G2634 Punica granatum HOM05D002113 ORTHO05D002124 1.3e-07 60.5 128 36.7
VMungo1383G0915 Vigna mungo HOM05D002113 ORTHO05D002124 2.2e-07 59.7 123 33.3
A04p34010 Brassica napus HOM05D002113 ORTHO05D002124 1.4e-06 57.0 129 31.8
BraA04t18863Z Brassica rapa HOM05D002113 ORTHO05D002124 1.4e-06 57.0 129 31.8
arahy.Tifrunner.gnm1.ann1.T7PCV6 Arachis hypogaea HOM05D002113 ORTHO05D002124 1.9e-06 56.6 126 35.7
C04p71820 Brassica napus HOM05D002113 ORTHO05D002124 1.9e-06 56.6 129 31.8
Glyma.18G225400 Glycine max HOM05D002113 ORTHO05D002124 1.9e-06 56.6 129 30.2
AT2G45760 Arabidopsis thaliana HOM05D002113 ORTHO05D002124 2.4e-06 56.2 131 32.8
AL4G44960 Arabidopsis lyrata HOM05D002113 ORTHO05D002124 3.2e-06 55.8 130 30.8
Cc02_g37410 Coffea canephora HOM05D002113 ORTHO05D002124 3.2e-06 55.8 126 32.5
Cc00_g34290 Coffea canephora HOM05D002113 ORTHO05D002124 4.2e-06 55.5 126 32.5
Thhalv10001640m.g Eutrema salsugineum HOM05D002113 ORTHO05D002124 4.2e-06 55.5 131 33.6
BolC4t28680H Brassica oleracea HOM05D002113 ORTHO05D002124 5.5e-06 55.1 129 31.0
A03p25360 Brassica napus HOM05D002113 ORTHO05D002124 7.1e-06 54.7 129 32.6
Gohir.A12G104400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 7.1e-06 54.7 126 34.9
Prupe.2G157400 Prunus persica HOM05D002113 ORTHO05D002124 9.3e-06 54.3 128 37.5


User provided reference genes

Program Settings