Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 8.5e-35 149.8 78 100.0
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 4.7e-25 117.5 61 100.0
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 4.7e-25 117.5 61 100.0
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 4.7e-25 117.5 61 100.0
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 8.8e-24 113.2 61 96.7
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.7e-22 109.0 57 100.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 2.0e-20 102.1 58 91.4
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 6.6e-19 97.1 61 86.9
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 6.6e-19 97.1 61 86.9
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 4.7e-17 90.9 61 82.0
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.7e-14 82.4 61 75.4
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.7e-14 82.4 58 74.1
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.4e-13 78.6 58 72.4
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.7e-12 75.1 61 70.5
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.7e-11 72.4 61 68.9
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 3.9e-11 71.2 61 60.7
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 2.5e-10 68.6 61 55.7
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 3.3e-10 68.2 61 55.7
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 3.3e-10 68.2 55 60.0
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.2e-09 66.2 61 55.7
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.2e-09 66.2 57 57.9
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.6e-09 65.9 61 50.8
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 4.7e-09 64.3 55 61.8
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 6.2e-09 63.9 55 61.8
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 6.2e-09 63.9 55 58.2
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 6.2e-09 63.9 61 52.5
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 8.0e-09 63.5 61 54.1
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.4e-08 62.8 57 54.4
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.8e-08 62.4 55 60.0
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.8e-08 62.4 55 56.4
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 2.3e-08 62.0 55 58.2
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 2.3e-08 62.0 57 52.6
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.1e-08 61.6 61 50.8
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 4.0e-08 61.2 61 50.8
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 4.0e-08 61.2 55 56.4
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 5.2e-08 60.8 57 52.6
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 5.2e-08 60.8 55 50.9
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 6.8e-08 60.5 61 54.1
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 6.8e-08 60.5 61 49.2
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 8.9e-08 60.1 54 55.6
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.2e-07 59.7 61 45.9
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 1.2e-07 59.7 61 50.8
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.2e-07 59.7 61 49.2
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.2e-07 59.7 55 54.5
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.2e-07 59.7 55 54.5
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.2e-07 59.7 61 50.8
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.5e-07 59.3 61 44.3
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 1.5e-07 59.3 61 52.5
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.5e-07 59.3 61 49.2
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.0e-07 58.9 61 50.8
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.0e-07 58.9 55 47.3
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 2.6e-07 58.5 55 49.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.6e-07 58.5 61 54.1
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.4e-07 58.2 57 54.4
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 3.4e-07 58.2 32 90.6
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 3.4e-07 58.2 32 90.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 3.4e-07 58.2 55 52.7
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 3.4e-07 58.2 55 56.4
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.4e-07 57.8 55 52.7
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 4.4e-07 57.8 61 52.5
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 5.8e-07 57.4 57 50.9
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 5.8e-07 57.4 55 49.1
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 5.8e-07 57.4 55 52.7
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 5.8e-07 57.4 55 50.9
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 7.5e-07 57.0 55 49.1
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 7.5e-07 57.0 55 50.9
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 9.8e-07 56.6 55 52.7
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 9.8e-07 56.6 55 54.5
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.3e-06 56.2 61 47.5
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.3e-06 56.2 61 47.5
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 1.3e-06 56.2 55 49.1
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 2.2e-06 55.5 60 46.7
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 2.9e-06 55.1 55 45.5
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 2.9e-06 55.1 55 52.7
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.9e-06 55.1 55 52.7
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.9e-06 55.1 55 52.7
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 2.9e-06 55.1 55 49.1
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.7e-06 54.7 61 49.2
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 3.7e-06 54.7 55 49.1
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 3.7e-06 54.7 61 49.2
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.9e-06 54.3 55 47.3
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 4.9e-06 54.3 57 40.4
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 4.9e-06 54.3 55 45.5
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 4.9e-06 54.3 55 49.1
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 4.9e-06 54.3 55 49.1
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 4.9e-06 54.3 55 50.9
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 6.4e-06 53.9 55 47.3
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 6.4e-06 53.9 55 54.5
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 6.4e-06 53.9 54 48.1
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 8.3e-06 53.5 61 44.3
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 8.3e-06 53.5 55 47.3


User provided reference genes

Program Settings