Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01367 Brassica carinata HOM05D002769 ORTHO05D003160 1.3e-45 186.0 93 100.0
BcaNung07248 Brassica carinata HOM05D002769 ORTHO05D003160 1.3e-45 186.0 93 100.0
BolC1t01033H Brassica oleracea HOM05D002769 ORTHO05D003160 1.3e-45 186.0 93 100.0
C01p10740 Brassica napus HOM05D002769 ORTHO05D003160 4.6e-43 177.6 93 95.7
A01p09150 Brassica napus HOM05D002769 ORTHO05D003160 4.0e-39 164.5 94 87.2
BraA01t00861Z Brassica rapa HOM05D002769 ORTHO05D003160 4.0e-39 164.5 94 87.2
Sp7g26770 Schrenkiella parvula HOM05D002769 ORTHO05D003160 8.9e-31 136.7 98 72.4
Thhalv10024350m.g Eutrema salsugineum HOM05D002769 ORTHO05D003160 1.5e-30 136.0 98 69.4
AT4G28760 Arabidopsis thaliana HOM05D002769 ORTHO05D003160 2.7e-27 125.2 98 68.4
Carub.0007s1188 Capsella rubella HOM05D002769 ORTHO05D003160 1.1e-25 119.8 98 62.2
AL7G23740 Arabidopsis lyrata HOM05D002769 ORTHO05D003160 1.5e-25 119.4 98 64.3
CARHR236550 Cardamine hirsuta HOM05D002769 ORTHO05D003160 8.9e-23 110.2 98 59.2
Aa31LG2G21610 Aethionema arabicum HOM05D002769 ORTHO05D003160 1.1e-17 93.2 102 52.9
A07p00510 Brassica napus HOM05D002769 ORTHO05D003160 1.5e-17 92.8 95 47.4
BraA07t27845Z Brassica rapa HOM05D002769 ORTHO05D003160 1.5e-17 92.8 95 47.4
BcaC06g36699 Brassica carinata HOM05D002769 ORTHO05D003160 2.1e-16 89.0 95 50.5
C07p00960 Brassica napus HOM05D002769 ORTHO05D003160 2.1e-16 89.0 95 50.5
BolC7t40533H Brassica oleracea HOM05D002769 ORTHO05D003160 2.1e-16 89.0 95 50.5
THA.LOC104804028 Tarenaya hassleriana HOM05D002769 ORTHO05D003160 2.8e-16 88.6 101 48.5
BcaB03g16815 Brassica carinata HOM05D002769 ORTHO05D003160 1.4e-15 86.3 89 49.4
Thhalv10001917m.g Eutrema salsugineum HOM05D002769 ORTHO05D003160 3.1e-15 85.1 93 43.0
THA.LOC104814547 Tarenaya hassleriana HOM05D002769 ORTHO05D003160 4.4e-14 81.3 92 43.5
Cpa.g.sc8.210 Carica papaya HOM05D002769 ORTHO05D003160 6.4e-13 77.4 90 45.6
Aa31LG8G17240 Aethionema arabicum HOM05D012015 ORTHO05D014750 1.1e-12 76.6 95 42.1
CsaV3_7G025430 Cucumis sativus L. HOM05D002769 ORTHO05D003160 1.9e-12 75.9 83 47.0
Duzib133G1342 Durio zibethinus HOM05D002769 ORTHO05D003160 2.4e-12 75.5 77 48.1
Gohir.D07G208700 Gossypium hirsutum HOM05D002769 ORTHO05D003160 4.2e-12 74.7 86 43.0
Gorai.001G235600 Gossypium raimondii HOM05D002769 ORTHO05D003160 4.2e-12 74.7 86 43.0
Sp3g33470 Schrenkiella parvula HOM05D002769 ORTHO05D003160 4.2e-12 74.7 93 44.1
Sed0000267 Sechium edule HOM05D002769 ORTHO05D003160 7.1e-12 73.9 83 48.2
ClCG09G009430 Citrullus lanatus HOM05D002769 ORTHO05D003160 1.6e-11 72.8 83 48.2
Manes.12G040100 Manihot esculenta HOM05D002769 ORTHO05D003160 2.1e-11 72.4 88 42.0
TWI23G0164 Tripterygium wilfordii HOM05D002769 ORTHO05D003160 2.1e-11 72.4 88 45.5
MELO3C024147.2 Cucumis melo HOM05D002769 ORTHO05D003160 2.7e-11 72.0 83 45.8
Haze_24739 Corylus avellana HOM05D002769 ORTHO05D003160 3.5e-11 71.6 88 40.9
Ciclev10018694m.g Citrus clementina HOM05D002769 ORTHO05D003160 4.6e-11 71.2 77 44.2
Duzib211G0696 Durio zibethinus HOM05D002769 ORTHO05D003160 4.6e-11 71.2 77 41.6
Duzib138G1260 Durio zibethinus HOM05D002769 ORTHO05D003160 6.0e-11 70.9 87 42.5
Cfa002513 Carpinus fangiana HOM05D002769 ORTHO05D003160 1.0e-10 70.1 90 41.1
Thecc.01G245100 Theobroma cacao HOM05D002769 ORTHO05D003160 1.0e-10 70.1 77 42.9
MD10G1171400 Malus domestica HOM05D002769 ORTHO05D003160 3.0e-10 68.6 83 45.8
FAN14G0266 Fragaria x ananassa HOM05D002769 ORTHO05D003160 6.6e-10 67.4 77 48.1
FAN15G3258 Fragaria x ananassa HOM05D002769 ORTHO05D003160 6.6e-10 67.4 77 48.1
Nitab4.5_0014701g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 6.6e-10 67.4 77 41.6
Solyc06g083660.4 Solanum lycopersicum HOM05D002769 ORTHO05D003160 1.1e-09 66.6 80 40.0
Sopen06g035050 Solanum pennellii HOM05D002769 ORTHO05D003160 1.1e-09 66.6 80 40.0
PGSC0003DMG400020083 Solanum tuberosum HOM05D002769 ORTHO05D003160 1.1e-09 66.6 80 38.8
FvH4_2g19940 Fragaria vesca HOM05D002769 ORTHO05D003160 1.5e-09 66.2 77 49.4
FAN24G0991 Fragaria x ananassa HOM05D002769 ORTHO05D003160 1.5e-09 66.2 77 49.4
Nitab4.5_0001557g0040 Nicotiana tabacum HOM05D002769 ORTHO05D003160 1.5e-09 66.2 79 38.0
PGR044G1424 Punica granatum HOM05D002769 ORTHO05D003160 1.5e-09 66.2 90 38.9
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 1.9e-09 65.9 77 40.3
Nitab4.5_0023523g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 2.5e-09 65.5 77 40.3
COL.COLO4_34722 Corchorus olitorius HOM05D002769 ORTHO05D003160 3.3e-09 65.1 85 41.2
Hma1.2p1_1393F.1_g280250 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 3.3e-09 65.1 77 41.6
Gohir.A07G202500 Gossypium hirsutum HOM05D002769 ORTHO05D003160 4.3e-09 64.7 86 40.7
Oeu015447.1 Olea europaea HOM05D002769 ORTHO05D003160 4.3e-09 64.7 83 39.8
PSO832G1375 Papaver somniferum HOM05D002769 ORTHO05D003160 4.3e-09 64.7 77 40.3
TWI59G1133 Tripterygium wilfordii HOM05D002769 ORTHO05D003160 4.3e-09 64.7 77 42.9
CARHR110730 Cardamine hirsuta HOM05D002769 ORTHO05D003160 5.6e-09 64.3 93 39.8
Dinv19246 Davidia involucrata HOM05D002769 ORTHO05D003160 5.6e-09 64.3 77 39.0
FAN27G3465 Fragaria x ananassa HOM05D002769 ORTHO05D003160 5.6e-09 64.3 77 46.8
Potri.002G253600 Populus trichocarpa HOM05D002769 ORTHO05D003160 5.6e-09 64.3 95 35.8
RcHm_v2.0_Chr6g0285601 Rosa chinensis HOM05D002769 ORTHO05D003160 5.6e-09 64.3 83 45.8
Sopen09g025250 Solanum pennellii HOM05D002769 ORTHO05D003160 5.6e-09 64.3 79 36.7
Actinidia37569 Actinidia chinensis HOM05D002769 ORTHO05D003160 7.3e-09 63.9 84 36.9
Nitab4.5_0002330g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 7.3e-09 63.9 79 35.4
Solyc09g063090.4 Solanum lycopersicum HOM05D002769 ORTHO05D003160 7.3e-09 63.9 79 36.7
VMungo0720G2819 Vigna mungo HOM05D002769 ORTHO05D003160 7.3e-09 63.9 73 42.5
Carub.0003s3457 Capsella rubella HOM05D002769 ORTHO05D003160 9.6e-09 63.5 94 39.4
Lj2C1137G13 Lonicera japonica HOM05D002769 ORTHO05D003160 9.6e-09 63.5 80 37.5
Sed0025022 Sechium edule HOM05D002769 ORTHO05D003160 9.6e-09 63.5 77 45.5
Manes.13G042600 Manihot esculenta HOM05D002769 ORTHO05D003160 1.3e-08 63.2 89 37.1
PGSC0003DMG400018957 Solanum tuberosum HOM05D002769 ORTHO05D003160 1.3e-08 63.2 77 36.4
Aqoxy5G00058 Aquilegia oxysepala HOM05D002769 ORTHO05D003160 2.1e-08 62.4 75 42.7
CiPaw.03G273400 Carya illinoinensis HOM05D002769 ORTHO05D003160 2.1e-08 62.4 77 41.6
ECA247G3589 Erigeron canadensis HOM05D002769 ORTHO05D003160 2.8e-08 62.0 76 43.4
MD05G1183600 Malus domestica HOM05D002769 ORTHO05D003160 2.8e-08 62.0 87 41.4
SalBow6G0913 Salvia bowleyana HOM05D002769 ORTHO05D003160 2.8e-08 62.0 80 37.5
Gohir.D08G210600 Gossypium hirsutum HOM05D002769 ORTHO05D003160 3.6e-08 61.6 79 43.0
Gorai.004G223300 Gossypium raimondii HOM05D002769 ORTHO05D003160 3.6e-08 61.6 79 43.0
Sabra02G0192800 Salix brachista HOM05D002769 ORTHO05D003160 3.6e-08 61.6 78 39.7
CANSAT01G1291 Cannabis sativa HOM05D002769 ORTHO05D003160 4.8e-08 61.2 88 39.8
Migut.D00499 Erythranthe guttata HOM05D002769 ORTHO05D003160 4.8e-08 61.2 83 36.1
Peaxi162Scf00052g02120 Petunia axillaris HOM05D002769 ORTHO05D003160 4.8e-08 61.2 74 39.2
QL09p043841 Quercus lobata HOM05D002769 ORTHO05D003160 4.8e-08 61.2 76 40.8
DCAR_012619 Daucus carota HOM05D002769 ORTHO05D003160 6.2e-08 60.8 106 35.8
Gohir.A08G192600 Gossypium hirsutum HOM05D002769 ORTHO05D003160 6.2e-08 60.8 79 43.0
Cc01_g17490 Coffea canephora HOM05D002769 ORTHO05D003160 8.1e-08 60.5 73 41.1
Sc05g0002490 Simmondsia chinensis HOM05D002769 ORTHO05D003160 8.1e-08 60.5 75 38.7
AL3G47850 Arabidopsis lyrata HOM05D002769 ORTHO05D003160 1.1e-07 60.1 94 39.4
CiPaw.04G192400 Carya illinoinensis HOM05D002769 ORTHO05D003160 1.1e-07 60.1 86 38.4
TWI14G1051 Tripterygium wilfordii HOM05D002769 ORTHO05D003160 1.1e-07 60.1 73 43.8
Atru.chr5.1923 Acer truncatum HOM05D002769 ORTHO05D003160 2.4e-07 58.9 74 37.8
CSS0005557 Camellia sinensis var. sinensis HOM05D002769 ORTHO05D003160 3.1e-07 58.5 81 37.0
ECA236G3239 Erigeron canadensis HOM05D002769 ORTHO05D003160 3.1e-07 58.5 80 36.2
HanXRQChr10g0280321 Helianthus annuus HOM05D002769 ORTHO05D003160 3.1e-07 58.5 73 39.7
HanXRQChr15g0468501 Helianthus annuus HOM05D002769 ORTHO05D003160 3.1e-07 58.5 72 45.8
Nn1g03080 Nelumbo nucifera HOM05D002769 ORTHO05D003160 3.1e-07 58.5 95 35.8
Phvul.007G155800 Phaseolus vulgaris HOM05D002769 ORTHO05D003160 4.0e-07 58.2 73 39.7
Peaxi162Scf00517g00316 Petunia axillaris HOM05D002769 ORTHO05D003160 5.3e-07 57.8 79 32.9
Rhsim13G0041700 Rhododendron simsii HOM05D002769 ORTHO05D003160 5.3e-07 57.8 89 37.1
AT2G20240 Arabidopsis thaliana HOM05D002769 ORTHO05D003160 6.9e-07 57.4 90 35.6
Dinv43037 Davidia involucrata HOM05D002769 ORTHO05D003160 6.9e-07 57.4 77 35.1
SGA_v2.0_scaffold42G16160 Striga asiatica HOM05D002769 ORTHO05D003160 9.0e-07 57.0 75 38.7
arahy.Tifrunner.gnm1.ann1.9PQ9XF Arachis hypogaea HOM05D002769 ORTHO05D003160 1.5e-06 56.2 76 38.2
arahy.Tifrunner.gnm1.ann1.Z27S6C Arachis hypogaea HOM05D002769 ORTHO05D003160 1.5e-06 56.2 76 38.2
Potri.014G194600 Populus trichocarpa HOM05D002769 ORTHO05D003160 1.5e-06 56.2 73 39.7
TAR362G0869 Trochodendron aralioides HOM05D002769 ORTHO05D003160 1.5e-06 56.2 73 38.4
TAR365G0493 Trochodendron aralioides HOM05D002769 ORTHO05D003160 1.5e-06 56.2 76 36.8
vmacro02723 Vaccinium macrocarpon HOM05D002769 ORTHO05D003160 1.5e-06 56.2 89 33.7
MSTRG.17533 Avicennia marina HOM05D002769 ORTHO05D003160 2.0e-06 55.8 83 34.9
ClCG07G001590 Citrullus lanatus HOM05D002769 ORTHO05D003160 2.0e-06 55.8 79 38.0
MELO3C012813.2 Cucumis melo HOM05D002769 ORTHO05D003160 2.0e-06 55.8 79 36.7
Eucgr.H00827 Eucalyptus grandis HOM05D002769 ORTHO05D003160 2.0e-06 55.8 70 41.4
PGR083G2315 Punica granatum HOM05D002769 ORTHO05D003160 2.0e-06 55.8 78 39.7
TAR636G3291 Trochodendron aralioides HOM05D002769 ORTHO05D003160 2.0e-06 55.8 69 39.1
CsaV3_3G028590 Cucumis sativus L. HOM05D002769 ORTHO05D003160 2.6e-06 55.5 79 39.2
Migut.N02244 Erythranthe guttata HOM05D002769 ORTHO05D003160 2.6e-06 55.5 75 37.3
Glyma.19G170900 Glycine max HOM05D002769 ORTHO05D003160 2.6e-06 55.5 82 39.0
Hma1.2p1_0825F.1_g224750 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 2.6e-06 55.5 72 38.9
Hma1.2p1_1224F.1_g268500 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 2.6e-06 55.5 72 38.9
Prupe.8G209800 Prunus persica HOM05D002769 ORTHO05D003160 2.6e-06 55.5 73 39.7
SGA_v2.0_scaffold1G00680 Striga asiatica HOM05D002769 ORTHO05D003160 2.6e-06 55.5 73 37.0
MSTRG.18369 Avicennia marina HOM05D002769 ORTHO05D003160 3.4e-06 55.1 100 34.0
Ca_08766_v3 Cicer arietinum L. HOM05D002769 ORTHO05D003160 7.6e-06 53.9 87 35.6
Glyma.03G169700 Glycine max HOM05D002769 ORTHO05D003160 7.6e-06 53.9 83 38.6
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 7.6e-06 53.9 83 32.5
Sed0013807 Sechium edule HOM05D002769 ORTHO05D003160 7.6e-06 53.9 83 36.1
Hund18344 Selenicereus undatus HOM05D002769 ORTHO05D003160 7.6e-06 53.9 86 37.2
Lj1C80T5 Lonicera japonica HOM05D002769 ORTHO05D003160 9.9e-06 53.5 74 39.2


User provided reference genes

Program Settings