Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 9.9e-104 380.6 261 100.0
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.7e-92 341.3 271 83.0
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.7e-92 341.3 271 83.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 7.4e-91 337.8 271 90.0
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 9.6e-91 337.4 270 90.4
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.9e-70 270.0 272 79.8
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.3e-67 259.2 278 78.1
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.9e-62 243.4 285 76.5
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 1.6e-56 223.8 288 72.6
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.2e-55 219.9 274 67.2
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.9e-55 219.5 283 73.1
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.5e-40 169.5 299 61.9
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.9e-40 168.7 292 62.7
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.5e-38 164.1 300 62.0
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 9.5e-38 161.4 301 61.5
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.1e-37 160.2 300 60.3
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.1e-37 160.2 300 60.3
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.1e-37 160.2 300 60.3
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 2.8e-37 159.8 301 61.1
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 4.0e-36 156.0 301 60.8
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 6.8e-36 155.2 295 59.3
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.5e-35 154.1 298 60.1
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.6e-35 153.3 251 61.4
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.6e-35 153.3 302 57.0
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.9e-34 149.1 252 55.2
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 9.2e-33 144.8 304 58.2
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.0e-31 141.4 258 59.3
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.1e-30 137.9 257 59.1
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.1e-30 137.9 258 59.3
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.5e-30 136.7 300 57.7
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 4.3e-30 136.0 252 62.3
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 4.3e-30 136.0 281 56.2
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 5.6e-30 135.6 196 49.5
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.6e-30 135.6 258 58.5
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 5.6e-30 135.6 258 58.5
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 9.5e-30 134.8 278 48.6
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.2e-29 134.4 262 58.4
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.1e-29 133.7 272 58.8
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.8e-29 133.3 270 54.1
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.8e-29 133.3 282 56.0
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 3.6e-29 132.9 270 54.1
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 6.2e-29 132.1 279 54.1
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 6.2e-29 132.1 274 56.6
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.0e-28 131.3 260 58.8
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.3e-28 130.2 194 47.4
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 5.2e-28 129.0 264 58.0
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 6.8e-28 128.6 266 56.8
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.5e-27 127.5 260 56.9
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.0e-27 127.1 265 56.2
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.0e-27 127.1 276 55.4
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 3.4e-27 126.3 266 54.9
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 4.4e-27 125.9 251 56.6
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 5.8e-27 125.6 288 55.6
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 5.8e-27 125.6 272 58.1
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.8e-27 125.6 261 58.6
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 7.5e-27 125.2 254 55.1
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 9.8e-27 124.8 183 47.5
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 1.7e-26 124.0 275 52.7
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.2e-26 123.6 268 56.3
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.2e-26 123.6 183 49.2
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 3.7e-26 122.9 273 53.5
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.7e-26 122.9 262 59.5
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 4.9e-26 122.5 190 46.3
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.9e-26 122.5 271 56.5
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.4e-26 122.1 262 59.5
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 6.4e-26 122.1 273 54.2
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 8.3e-26 121.7 253 57.3
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.4e-25 120.9 260 56.9
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 2.4e-25 120.2 266 55.3
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 3.2e-25 119.8 262 56.1
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.2e-25 119.8 250 57.2
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 4.1e-25 119.4 264 55.7
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 4.1e-25 119.4 263 57.0
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 4.1e-25 119.4 285 50.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 7.0e-25 118.6 257 56.8
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 9.2e-25 118.2 263 53.2
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.2e-24 117.9 195 45.1
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.2e-24 117.9 188 48.9
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 2.0e-24 117.1 282 51.8
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.7e-24 116.7 193 44.6
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.7e-24 116.7 272 56.2
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.7e-24 116.7 261 54.8
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 3.5e-24 116.3 265 55.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.5e-24 116.3 257 56.4
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 4.6e-24 115.9 269 52.4
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.6e-24 115.9 273 51.3
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 6.0e-24 115.5 267 53.2
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 7.8e-24 115.2 264 55.3
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.0e-23 114.8 252 46.4
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.0e-23 114.8 293 48.8
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.7e-23 114.0 272 55.1
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 2.3e-23 113.6 254 56.7
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.3e-23 113.6 298 49.7
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 2.3e-23 113.6 207 41.1
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.3e-23 113.6 246 58.5
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.0e-23 113.2 290 52.8
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.0e-23 113.2 265 54.0
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 3.9e-23 112.8 254 53.9
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.9e-23 112.8 298 49.7
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 3.9e-23 112.8 268 51.9
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 3.9e-23 112.8 262 53.1
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 5.0e-23 112.5 296 51.0
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.0e-23 112.5 296 51.0
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.0e-23 112.5 261 47.1
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 8.6e-23 111.7 294 50.3
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.5e-22 110.9 261 53.3
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.5e-22 110.9 280 50.0
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.9e-22 110.5 298 49.3
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.9e-22 110.5 256 45.3
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.5e-22 110.2 267 54.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.5e-22 110.2 220 55.9
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 3.3e-22 109.8 268 54.1
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 3.3e-22 109.8 256 55.9
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 3.3e-22 109.8 290 49.7
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 5.6e-22 109.0 284 51.4
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 7.3e-22 108.6 174 47.1
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 9.5e-22 108.2 259 54.4
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.6e-21 107.5 266 52.3
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.8e-21 106.7 274 55.5
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.8e-21 106.7 255 49.0
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 3.6e-21 106.3 257 54.5
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 6.2e-21 105.5 310 44.8
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 8.1e-21 105.1 262 51.1
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.1e-20 104.8 188 46.3
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.3e-20 103.6 219 61.6
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.3e-20 103.6 273 51.6
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 6.8e-20 102.1 194 40.2
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 8.9e-20 101.7 267 49.4
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 8.9e-20 101.7 251 53.4
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 8.9e-20 101.7 289 50.9
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.5e-19 100.9 265 48.3
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 3.4e-19 99.8 188 39.4
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 5.8e-19 99.0 192 39.1
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.3e-18 97.8 259 53.3
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.7e-18 97.4 192 39.6
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 4.9e-18 95.9 284 48.9
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 4.9e-18 95.9 238 35.7
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 6.4e-18 95.5 254 53.9
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.4e-18 95.5 284 47.9
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 8.3e-18 95.1 152 44.1
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.4e-17 94.4 134 47.0
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.9e-17 94.0 134 47.0
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.2e-16 91.3 299 49.2
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.1e-16 90.5 249 30.9
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.1e-16 90.5 143 44.1
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.7e-16 90.1 285 48.1
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 4.6e-16 89.4 253 43.1
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 7.8e-16 88.6 280 47.9
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.7e-15 87.4 257 47.9
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 2.3e-15 87.0 251 51.8
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.1e-15 85.9 270 51.1
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 6.6e-15 85.5 301 47.8
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 6.6e-15 85.5 280 47.9
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.7e-13 79.3 163 68.1
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 6.2e-13 79.0 279 46.6
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.3e-10 71.2 154 35.1
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 2.9e-10 70.1 210 36.7
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 3.8e-10 69.7 46 76.1
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 6.4e-10 68.9 223 38.1
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 8.4e-10 68.6 132 46.2
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 4.1e-09 66.2 236 45.8
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 5.4e-09 65.9 288 45.1
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.2e-08 64.7 287 43.6
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 1.3e-07 61.2 46 67.4
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.1e-06 58.2 92 46.7
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 5.6e-06 55.8 65 50.8


User provided reference genes

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