Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07166 Brassica carinata HOM05D001920 ORTHO05D004895 1.0e-41 172.9 84 100.0
C04p55980 Brassica napus HOM05D001920 ORTHO05D004895 1.0e-41 172.9 84 100.0
BolC4t27131H Brassica oleracea HOM05D001920 ORTHO05D004895 1.0e-41 172.9 84 100.0
A04p20270 Brassica napus HOM05D001920 ORTHO05D004895 6.6e-41 170.2 84 97.6
BraA04t17606Z Brassica rapa HOM05D001920 ORTHO05D004895 6.6e-41 170.2 84 97.6
AT2G26200 Arabidopsis thaliana HOM05D001920 ORTHO05D004895 1.3e-33 146.0 86 83.7
AL4G18730 Arabidopsis lyrata HOM05D001920 ORTHO05D004895 3.0e-33 144.8 85 81.2
CARHR115020 Cardamine hirsuta HOM05D001920 ORTHO05D004895 5.0e-33 144.1 85 80.0
Thhalv10001947m.g Eutrema salsugineum HOM05D001920 ORTHO05D004895 7.3e-32 140.2 85 80.0
Sp4g06300 Schrenkiella parvula HOM05D001920 ORTHO05D004895 1.6e-31 139.0 83 78.3
Carub.0001s3487 Capsella rubella HOM05D001920 ORTHO05D004895 2.1e-31 138.7 85 82.4
Aa31LG5G9590 Aethionema arabicum HOM05D001920 ORTHO05D004895 2.8e-31 138.3 84 76.2
THA.LOC104819893 Tarenaya hassleriana HOM05D001920 ORTHO05D004895 1.6e-23 112.5 83 68.7
Cpa.g.sc7.156 Carica papaya HOM05D001920 ORTHO05D004895 9.9e-21 103.2 81 61.7
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 1.3e-20 102.8 76 60.5
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 4.9e-20 100.9 76 56.6
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 4.9e-20 100.9 76 56.6
Gohir.A06G085800 Gossypium hirsutum HOM05D001920 ORTHO05D004895 6.4e-20 100.5 76 56.6
Thecc.09G057600 Theobroma cacao HOM05D001920 ORTHO05D004895 2.4e-19 98.6 76 57.9
QL02p000696 Quercus lobata HOM05D001920 ORTHO05D004895 4.1e-19 97.8 80 57.5
Potri.006G225600 Populus trichocarpa HOM05D001920 ORTHO05D004895 5.4e-19 97.4 75 57.3
Hma1.2p1_0196F.1_g084790 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 7.1e-19 97.1 73 57.5
Oeu018622.1 Olea europaea HOM05D001920 ORTHO05D004895 7.1e-19 97.1 74 59.5
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 9.2e-19 96.7 75 56.0
CiPaw.15G036700 Carya illinoinensis HOM05D001920 ORTHO05D004895 1.2e-18 96.3 81 55.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.1e-18 95.5 75 57.3
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 2.7e-18 95.1 72 58.3
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 3.5e-18 94.7 72 59.7
Ciclev10007880m.g Citrus clementina HOM05D001920 ORTHO05D004895 4.6e-18 94.4 76 52.6
COL.COLO4_21091 Corchorus olitorius HOM05D001920 ORTHO05D004895 7.8e-18 93.6 75 54.7
FvH4_2g31511 Fragaria vesca HOM05D001920 ORTHO05D004895 7.8e-18 93.6 74 59.5
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.8e-18 93.6 74 59.5
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.8e-18 93.6 74 59.5
Prupe.1G408900 Prunus persica HOM05D001920 ORTHO05D004895 1.0e-17 93.2 73 60.3
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 1.0e-17 93.2 75 54.7
EL10Ac2g03824 Beta vulgaris HOM05D001920 ORTHO05D004895 1.3e-17 92.8 73 58.9
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-17 92.4 74 58.1
Ah.10g034110 Amaranthus hybridus HOM05D001920 ORTHO05D004895 3.0e-17 91.7 76 59.2
Glyma.17G226800 Glycine max HOM05D001920 ORTHO05D004895 3.9e-17 91.3 72 56.9
GSVIVG01012573001 Vitis vinifera HOM05D001920 ORTHO05D004895 3.9e-17 91.3 73 58.9
Glyma.14G097800 Glycine max HOM05D001920 ORTHO05D004895 5.1e-17 90.9 72 56.9
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 5.1e-17 90.9 72 55.6
Phvul.001G092600 Phaseolus vulgaris HOM05D001920 ORTHO05D004895 5.1e-17 90.9 68 57.4
GSVIVG01012560001 Vitis vinifera HOM05D001920 ORTHO05D004895 5.1e-17 90.9 72 58.3
Nitab4.5_0003730g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 6.6e-17 90.5 75 56.0
VMungo0647G0099 Vigna mungo HOM05D001920 ORTHO05D004895 8.6e-17 90.1 68 58.8
Nn8g38776 Nelumbo nucifera HOM05D001920 ORTHO05D004895 1.1e-16 89.7 77 53.2
AUR62009117 Chenopodium quinoa HOM05D001920 ORTHO05D004895 1.5e-16 89.4 70 62.9
Actinidia25711 Actinidia chinensis HOM05D001920 ORTHO05D004895 1.9e-16 89.0 79 59.5
Nitab4.5_0003458g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 1.9e-16 89.0 76 56.6
CAN.G1312.6 Capsicum annuum HOM05D001920 ORTHO05D004895 2.5e-16 88.6 77 58.4
Lj7C259G3 Lonicera japonica HOM05D001920 ORTHO05D004895 2.5e-16 88.6 81 53.1
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 2.5e-16 88.6 81 53.1
Solyc08g062770.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 2.5e-16 88.6 77 57.1
DCAR_004400 Daucus carota HOM05D001920 ORTHO05D004895 3.3e-16 88.2 76 53.9
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 4.3e-16 87.8 79 54.4
AUR62039141 Chenopodium quinoa HOM05D001920 ORTHO05D004895 4.3e-16 87.8 70 62.9
Lj5g0021243 Lotus japonicus HOM05D001920 ORTHO05D004895 5.6e-16 87.4 72 55.6
MD08G1065700 Malus domestica HOM05D001920 ORTHO05D004895 5.6e-16 87.4 72 59.7
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 9.5e-16 86.7 72 52.8
Eucgr.C03062 Eucalyptus grandis HOM05D001920 ORTHO05D004895 9.5e-16 86.7 79 50.6
Psat6g021640 Pisum sativum HOM05D001920 ORTHO05D004895 9.5e-16 86.7 68 55.9
RcHm_v2.0_Chr6g0311271 Rosa chinensis HOM05D001920 ORTHO05D004895 1.2e-15 86.3 76 53.9
Haze_18152 Corylus avellana HOM05D001920 ORTHO05D004895 1.6e-15 85.9 76 56.6
CSS0015201 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D004895 2.8e-15 85.1 74 54.1
Manes.16G082500 Manihot esculenta HOM05D001920 ORTHO05D004895 2.8e-15 85.1 76 47.4
TWI34G1198 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 3.6e-15 84.7 76 50.0
TAR626G1466 Trochodendron aralioides HOM05D001920 ORTHO05D004895 4.7e-15 84.3 74 54.1
Dinv12436 Davidia involucrata HOM05D001920 ORTHO05D004895 6.2e-15 84.0 70 58.6
PSO210G1339 Papaver somniferum HOM05D001920 ORTHO05D004895 8.1e-15 83.6 72 59.7
SalBow4G0898 Salvia bowleyana HOM05D001920 ORTHO05D004895 8.1e-15 83.6 80 50.0
unitig_748.g8245 Utricularia gibba HOM05D001920 ORTHO05D004895 8.1e-15 83.6 76 51.3
Peaxi162Scf00070g00315 Petunia axillaris HOM05D001920 ORTHO05D004895 1.1e-14 83.2 77 51.9
ECA234G4475 Erigeron canadensis HOM05D001920 ORTHO05D004895 1.4e-14 82.8 80 48.8
Lj7C264T3 Lonicera japonica HOM05D001920 ORTHO05D004895 1.4e-14 82.8 71 60.6
PSO210G7567 Papaver somniferum HOM05D001920 ORTHO05D004895 1.4e-14 82.8 76 59.2
TWI32G0956 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 3.1e-14 81.6 73 56.2
Aqoxy7G04000 Aquilegia oxysepala HOM05D001920 ORTHO05D004895 4.0e-14 81.3 73 50.7
vmacro21977 Vaccinium macrocarpon HOM05D001920 ORTHO05D004895 4.0e-14 81.3 81 49.4
MSTRG.11648 Avicennia marina HOM05D001920 ORTHO05D004895 5.2e-14 80.9 70 55.7
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 6.8e-14 80.5 79 44.3
HanXRQChr10g0309731 Helianthus annuus HOM05D001920 ORTHO05D004895 1.2e-13 79.7 80 48.8
PGR044G1960 Punica granatum HOM05D001920 ORTHO05D004895 1.2e-13 79.7 76 51.3
Hund03421 Selenicereus undatus HOM05D001920 ORTHO05D004895 1.5e-13 79.3 70 57.1
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 2.6e-13 78.6 72 48.6
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 4.4e-13 77.8 76 46.1
CsaV3_4G035790 Cucumis sativus L. HOM05D001920 ORTHO05D004895 2.2e-12 75.5 79 41.8
CDE02G3203 Ceratophyllum demersum HOM05D001920 ORTHO05D004895 2.9e-12 75.1 72 51.4
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 3.8e-12 74.7 74 48.6
ClCG05G018010 Citrullus lanatus HOM05D001920 ORTHO05D004895 6.4e-12 73.9 75 45.3
SGA_v2.0_scaffold20G09202 Striga asiatica HOM05D001920 ORTHO05D004895 8.4e-12 73.6 78 48.7
Migut.D00409 Erythranthe guttata HOM05D001920 ORTHO05D004895 1.2e-10 69.7 71 47.9
Zm00001eb003510 Zea mays HOM05D001920 ORTHO05D004895 7.8e-10 67.0 74 41.9
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 1.3e-09 66.2 70 48.6
SEGI_34471 Sequoiadendron giganteum HOM05D001920 ORTHO05D004895 1.3e-09 66.2 79 40.5
MBI11_g07545_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D004895 3.0e-09 65.1 82 42.7
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 3.9e-09 64.7 76 44.7
Sc23g0005760 Simmondsia chinensis HOM05D001920 ORTHO05D004895 8.7e-09 63.5 69 44.9
ATR0716G012 Amborella trichopoda HOM05D001920 ORTHO05D004895 9.6e-08 60.1 79 43.0


User provided reference genes

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