Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 2.9e-166 588.6 312 100.0
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 4.4e-151 538.1 334 87.1
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 4.4e-151 538.1 334 87.1
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 4.2e-149 531.6 312 91.3
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 1.2e-148 530.0 312 90.4
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 1.2e-148 530.0 312 90.4
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 2.4e-141 505.8 312 85.6
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 7.9e-140 500.7 312 84.0
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 5.6e-138 494.6 313 83.4
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 4.6e-132 474.9 287 85.0
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 3.6e-124 448.7 314 76.8
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 1.4e-112 410.2 311 72.0
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 2.1e-108 396.4 254 83.5
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 1.5e-98 363.6 314 63.4
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 2.7e-95 352.8 308 61.4
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 5.9e-95 351.7 317 59.3
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 3.8e-94 349.0 306 60.5
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 3.8e-94 349.0 314 59.6
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 6.5e-94 348.2 308 62.0
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 4.0e-91 339.0 308 60.1
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 6.8e-91 338.2 196 89.3
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 1.2e-90 337.4 276 61.6
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 7.5e-90 334.7 294 60.2
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 9.8e-90 334.3 273 62.6
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 9.8e-90 334.3 310 59.4
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.3e-89 334.0 307 58.3
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 3.7e-89 332.4 307 58.0
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 3.7e-89 332.4 293 60.4
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 8.3e-89 331.3 268 63.4
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 1.1e-88 330.9 288 61.1
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 2.4e-88 329.7 305 58.7
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 3.1e-88 329.3 297 60.3
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 4.1e-88 328.9 270 64.4
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 4.1e-88 328.9 306 58.8
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 4.1e-88 328.9 303 59.7
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 5.4e-88 328.6 310 57.7
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 9.1e-88 327.8 291 59.1
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 5.9e-87 325.1 263 63.1
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 7.7e-87 324.7 312 56.1
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.0e-86 324.3 312 56.1
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.3e-86 323.9 309 57.0
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 1.3e-86 323.9 297 59.6
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 2.9e-86 322.8 262 63.7
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 2.9e-86 322.8 307 58.0
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 5.0e-86 322.0 314 57.6
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 6.5e-86 321.6 309 57.0
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 6.5e-86 321.6 268 60.8
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 8.5e-86 321.2 256 62.9
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 1.5e-85 320.5 284 62.0
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 2.5e-85 319.7 299 58.5
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.5e-85 319.7 268 59.7
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 2.5e-85 319.7 299 57.5
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 4.2e-85 318.9 316 56.3
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 7.2e-85 318.2 268 60.1
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 7.2e-85 318.2 295 58.6
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 9.5e-85 317.8 310 57.1
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 3.6e-84 315.8 295 56.3
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 3.6e-84 315.8 281 60.5
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 6.1e-84 315.1 266 59.8
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 6.1e-84 315.1 268 60.8
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 3.0e-83 312.8 261 61.7
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 4.0e-83 312.4 321 53.0
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.7e-82 308.5 261 60.2
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 9.8e-82 307.8 312 57.1
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.3e-81 307.4 282 59.9
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 2.2e-81 306.6 274 58.8
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 2.2e-81 306.6 296 56.1
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 8.3e-81 304.7 253 61.3
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 8.3e-81 304.7 281 57.7
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 3.1e-80 302.8 342 50.6
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 9.2e-80 301.2 279 56.6
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 1.2e-79 300.8 248 60.5
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 1.2e-79 300.8 291 55.7
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.6e-79 300.4 302 55.3
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 3.5e-79 299.3 253 61.3
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.0e-78 297.7 268 57.5
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 6.6e-78 295.0 257 58.4
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 4.3e-77 292.4 309 52.1
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 2.1e-76 290.0 269 57.2
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 2.8e-76 289.7 297 53.9
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 8.0e-76 288.1 274 56.2
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 1.5e-74 283.9 313 50.8
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 2.0e-74 283.5 315 52.4
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 6.4e-73 278.5 278 55.4
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.8e-72 276.9 312 51.0
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 1.2e-71 274.2 246 58.9
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 3.5e-71 272.7 307 50.8
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 5.2e-67 258.8 308 50.3
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.5e-66 257.3 308 50.0
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.1e-64 251.1 284 47.5
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 6.6e-62 241.9 196 61.7
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 7.3e-61 238.4 193 62.7
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 8.9e-59 231.5 285 47.4
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 8.9e-59 231.5 220 55.5
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 3.7e-57 226.1 170 67.6
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 1.5e-53 214.2 322 42.9
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.4e-48 196.8 212 54.2
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 5.4e-48 195.7 202 51.5
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.3e-46 190.3 156 59.6
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 8.1e-44 181.8 158 60.8
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 5.8e-42 175.6 261 39.1
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 3.6e-36 156.4 136 56.6
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 3.1e-35 153.3 152 56.6
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.1e-29 134.8 170 47.1
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.1e-19 100.1 189 35.4
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.7e-17 94.4 282 30.9
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 1.6e-15 87.8 288 30.2
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 3.1e-11 73.6 102 42.2
C02p30170 Brassica napus HOM05D006979 ORTHO05D033722 1.7e-09 67.8 52 69.2
BolC2t09067H Brassica oleracea HOM05D006979 ORTHO05D033722 1.7e-09 67.8 52 69.2
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 3.8e-09 66.6 52 63.5
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 8.5e-09 65.5 243 28.4
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 4.2e-08 63.2 52 59.6
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 7.2e-08 62.4 121 32.2
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 7.9e-07 58.9 231 26.8
AagrBONN_evm.TU.Sc2ySwM_228.2449 Anthoceros agrestis HOM05D006655 ORTHO05D007986 5.1e-06 56.2 230 26.5


User provided reference genes

Program Settings