Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-51 204.9 95 100.0
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-49 199.1 92 100.0
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.5e-49 199.1 92 100.0
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.5e-49 199.1 92 100.0
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.5e-49 199.1 92 100.0
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.5e-49 199.1 92 100.0
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 3.4e-46 188.0 93 95.7
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 6.7e-42 173.7 99 84.8
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.3e-40 169.5 99 83.8
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 5.3e-39 164.1 99 82.8
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.7e-37 159.1 100 78.0
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-37 159.1 92 87.0
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.7e-37 159.1 92 87.0
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.7e-37 159.1 92 87.0
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 8.5e-37 156.8 92 83.7
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 7.2e-36 153.7 75 92.0
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 2.1e-35 152.1 93 82.8
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 2.1e-35 152.1 100 78.0
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.1e-33 146.4 101 75.2
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 7.4e-33 143.7 89 78.7
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.3e-32 142.9 93 73.1
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.3e-32 142.9 93 73.1
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.8e-32 141.7 93 72.0
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.7e-32 141.4 93 74.2
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 4.8e-32 141.0 93 73.1
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 4.8e-32 141.0 93 73.1
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 8.2e-32 140.2 92 71.7
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.1e-31 139.8 93 73.1
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.1e-31 139.8 93 72.0
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.8e-31 139.0 93 71.0
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 2.4e-31 138.7 102 74.5
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.1e-31 138.3 93 72.0
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.1e-31 138.3 93 73.1
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 4.1e-31 137.9 93 68.8
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.1e-31 137.9 93 73.1
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 9.1e-31 136.7 93 71.0
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.2e-30 136.3 92 70.7
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 1.2e-30 136.3 95 73.7
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 2.0e-30 135.6 93 69.9
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.0e-29 133.3 93 73.1
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.3e-29 132.9 93 67.7
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.7e-29 132.5 93 66.7
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.7e-29 132.5 93 71.0
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.2e-29 132.1 93 69.9
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 2.9e-29 131.7 93 67.7
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 3.8e-29 131.3 94 71.3
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 6.5e-29 130.6 93 65.6
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 6.5e-29 130.6 93 65.6
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 8.5e-29 130.2 93 66.7
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.5e-28 129.4 94 70.2
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.9e-28 129.0 93 66.7
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.9e-28 129.0 93 65.6
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 2.5e-28 128.6 93 65.6
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-28 128.6 93 65.6
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-28 128.6 93 65.6
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-28 128.6 93 65.6
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-28 128.6 93 65.6
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-28 128.6 93 65.6
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.5e-28 128.6 97 67.0
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 3.2e-28 128.3 93 65.6
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 4.2e-28 127.9 99 67.7
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 4.2e-28 127.9 100 70.0
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 5.5e-28 127.5 94 69.1
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 5.5e-28 127.5 94 69.1
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 7.2e-28 127.1 93 65.6
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 9.4e-28 126.7 98 70.4
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-27 126.3 92 64.1
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.6e-27 125.9 97 68.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.6e-27 125.9 91 68.1
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 2.1e-27 125.6 97 67.0
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.1e-27 125.6 91 68.1
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.1e-27 125.6 91 68.1
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 2.7e-27 125.2 93 61.3
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 8.0e-27 123.6 93 69.9
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.4e-26 122.9 93 63.4
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.4e-26 122.9 93 63.4
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.3e-26 122.1 84 69.0
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.3e-26 122.1 84 69.0
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 6.7e-26 120.6 93 59.1
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 6.7e-26 120.6 93 59.1
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.2e-25 119.8 85 67.1
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.5e-25 119.4 100 61.0
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.0e-25 119.0 95 65.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 5.7e-25 117.5 99 62.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.3e-24 116.3 100 59.0
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.8e-24 115.2 93 64.5
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 3.7e-24 114.8 96 64.6
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 6.3e-24 114.0 68 76.5
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 8.2e-24 113.6 93 60.2
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.4e-23 112.8 93 63.4
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 2.4e-23 112.1 100 59.0
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.4e-23 112.1 95 62.1
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 3.1e-23 111.7 96 61.5
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.1e-23 111.3 100 61.0
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 9.1e-23 110.2 93 60.2
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.6e-22 109.4 69 73.9
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.7e-21 105.9 93 57.0
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.9e-21 105.1 95 58.9
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 3.8e-21 104.8 77 63.6
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 5.0e-21 104.4 83 62.7
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 8.5e-21 103.6 95 58.9
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.1e-20 103.2 95 55.8
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.5e-20 102.8 84 58.3
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.2e-20 101.7 99 55.6
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.1e-19 99.0 95 54.7
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.7e-19 98.6 93 52.7
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 8.0e-19 97.1 93 55.9
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.0e-18 96.7 98 52.0
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.0e-18 96.7 95 53.7
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.4e-18 96.3 85 60.0
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 4.0e-18 94.7 84 59.5
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 5.2e-18 94.4 80 57.5
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 5.2e-18 94.4 80 57.5
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 8.8e-18 93.6 95 52.6
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 3.4e-17 91.7 83 57.8
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 5.7e-17 90.9 81 60.5
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.7e-16 89.4 72 61.1
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 6.3e-16 87.4 76 57.9
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 6.3e-16 87.4 105 45.7
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 4.1e-15 84.7 91 52.7
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 7.0e-15 84.0 87 51.7
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 7.7e-14 80.5 38 97.4
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 6.5e-13 77.4 81 51.9
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 6.5e-13 77.4 79 53.2
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.9e-12 75.9 65 58.5
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 5.5e-12 74.3 101 45.5
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 2.1e-11 72.4 81 50.6
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 3.0e-10 68.6 91 41.8
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 3.0e-10 68.6 51 56.9
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 8.3e-08 60.5 81 48.1


User provided reference genes

Program Settings