Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.3e-114 416.4 200 100.0
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 4.8e-74 281.6 197 77.2
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 4.8e-74 281.6 197 77.2
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.8e-73 279.6 197 76.6
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 3.9e-68 261.9 197 73.1
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.2e-66 256.1 197 72.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 2.9e-63 245.7 197 70.6
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.2e-48 197.2 199 61.3
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 4.2e-46 188.7 198 58.1
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.3e-44 183.0 193 58.5
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 2.2e-42 176.4 195 56.9
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.2e-40 170.6 194 54.6
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 2.0e-40 169.9 194 55.7
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.5e-38 163.7 197 55.8
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 2.5e-38 162.9 194 53.6
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 5.6e-38 161.8 193 52.3
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 5.6e-38 161.8 193 52.3
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 5.6e-38 161.8 193 54.4
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 7.3e-38 161.4 205 50.2
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 2.1e-37 159.8 196 54.1
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 3.2e-33 146.0 202 48.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 6.0e-32 141.7 204 48.5
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 5.0e-31 138.7 205 48.3
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 8.6e-31 137.9 195 50.8
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.5e-30 136.3 198 47.0
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.5e-30 136.3 198 47.0
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 3.3e-30 136.0 197 50.3
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.3e-30 136.0 197 50.3
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.3e-30 135.6 198 47.0
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.2e-29 134.0 205 47.3
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.2e-29 134.0 205 47.3
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.1e-29 133.3 207 45.9
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.1e-29 133.3 197 49.7
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.8e-29 132.9 200 46.5
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 8.0e-29 131.3 195 47.2
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.0e-29 131.3 197 49.2
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.0e-29 131.3 202 46.0
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.1e-28 131.0 189 48.1
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-28 130.6 197 49.2
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.4e-28 130.6 189 48.1
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 2.3e-28 129.8 204 46.1
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 4.0e-28 129.0 213 40.8
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 6.8e-28 128.3 199 44.2
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-27 126.7 188 48.4
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.4e-27 125.9 206 45.6
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.4e-27 125.6 201 42.8
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 7.5e-27 124.8 189 47.1
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 9.8e-27 124.4 195 47.7
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.3e-26 124.0 211 45.5
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.9e-26 122.9 201 44.3
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.7e-26 122.5 188 47.9
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 9.2e-25 117.9 214 39.3
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.2e-24 117.5 99 61.6
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.6e-24 117.1 97 61.9
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 4.6e-24 115.5 204 41.7
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 7.8e-24 114.8 195 43.6
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.7e-23 113.6 193 42.5
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 8.6e-23 111.3 194 45.9
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.1e-22 110.9 212 37.7
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.5e-22 110.5 200 41.5
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.5e-22 110.5 215 38.6
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 3.3e-22 109.4 210 42.9
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 9.5e-22 107.8 186 40.9
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 9.5e-22 107.8 197 39.6
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 3.6e-21 105.9 206 40.8
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 4.7e-21 105.5 181 41.4
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.1e-21 104.8 213 37.1
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.1e-21 104.8 213 37.1
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.1e-20 104.4 91 61.5
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.8e-20 103.6 99 58.6
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 2.3e-20 103.2 97 56.7
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 5.2e-20 102.1 215 36.7
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 6.8e-20 101.7 214 36.9
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 6.8e-20 101.7 94 58.5
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 8.9e-20 101.3 93 60.2
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 8.9e-20 101.3 214 38.8
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.2e-19 100.9 212 42.0
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.6e-19 99.8 203 38.4
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 3.4e-19 99.4 198 40.9
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.4e-19 99.4 56 80.4
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 4.4e-19 99.0 184 39.1
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 5.8e-19 98.6 175 42.9
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 5.8e-19 98.6 112 50.0
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 7.5e-19 98.2 97 56.7
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 7.5e-19 98.2 188 43.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 9.9e-19 97.8 97 56.7
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 9.9e-19 97.8 194 39.2
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 9.9e-19 97.8 194 39.2
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.7e-18 97.1 205 39.5
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 1.7e-18 97.1 159 41.5
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.2e-18 96.7 92 57.6
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 2.2e-18 96.7 96 54.2
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.9e-18 96.3 96 54.2
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 3.7e-18 95.9 178 42.1
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.7e-18 95.9 208 40.9
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 3.7e-18 95.9 96 53.1
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 4.9e-18 95.5 92 56.5
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 4.9e-18 95.5 215 36.3
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 4.9e-18 95.5 92 57.6
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 6.4e-18 95.1 168 42.3
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 6.4e-18 95.1 116 47.4
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 6.4e-18 95.1 129 48.8
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.1e-17 94.4 217 37.3
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.4e-17 94.0 126 50.0
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.9e-17 93.6 56 76.8
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 2.4e-17 93.2 91 54.9
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 3.2e-17 92.8 223 35.9
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 3.2e-17 92.8 91 61.5
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 4.1e-17 92.4 144 46.5
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 5.4e-17 92.0 97 54.6
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.1e-16 90.1 91 60.4
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 3.5e-16 89.4 119 47.1
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 3.5e-16 89.4 91 59.3
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.6e-16 89.0 87 58.6
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 6.0e-16 88.6 62 71.0
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 7.8e-16 88.2 161 42.9
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 7.8e-16 88.2 56 73.2
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.3e-15 86.7 190 37.9
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 3.9e-15 85.9 127 42.5
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 1.1e-14 84.3 209 34.4
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.9e-14 83.6 92 52.2
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 3.3e-14 82.8 209 34.4
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 4.3e-14 82.4 92 50.0
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.3e-14 82.4 189 38.1
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 5.6e-14 82.0 57 66.7
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-13 80.9 178 37.6
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.6e-13 80.5 199 35.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 8.1e-13 78.2 108 43.5
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.4e-12 77.4 171 38.0
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 8.9e-12 74.7 115 48.7
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 4.4e-11 72.4 43 76.7
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 4.4e-11 72.4 43 76.7
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 6.0e-08 62.0 90 36.7


User provided reference genes

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