Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 2.4e-138 495.7 298 100.0
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.6e-121 439.9 329 86.6
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-116 423.3 329 73.6
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.5e-116 423.3 329 74.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.0e-112 410.6 323 72.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 6.6e-112 407.9 334 69.8
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.6e-110 403.3 318 70.8
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.9e-103 379.8 327 68.5
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.0e-100 369.8 327 66.1
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.8e-96 356.7 328 63.1
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 8.7e-96 354.4 326 62.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.3e-95 352.4 327 62.4
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.3e-94 350.5 326 61.3
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 1.2e-81 307.4 327 54.7
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 8.2e-78 294.7 334 55.7
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.8e-72 276.9 250 66.0
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 4.1e-69 265.8 216 69.9
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 4.7e-65 252.3 335 46.0
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.3e-64 250.0 325 44.0
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 3.9e-64 249.2 325 45.2
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.6e-63 246.5 328 44.8
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 4.4e-63 245.7 325 43.4
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 9.7e-63 244.6 324 44.4
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.3e-62 244.2 325 45.5
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 3.7e-62 242.7 325 45.2
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 6.3e-62 241.9 325 43.1
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 8.2e-62 241.5 324 43.8
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.1e-61 239.6 325 43.7
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 4.1e-61 239.2 325 44.0
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.6e-60 237.3 325 42.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.6e-60 237.3 325 42.8
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 4.5e-60 235.7 325 43.7
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.9e-60 235.3 329 42.6
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.9e-60 235.3 325 42.5
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 7.7e-60 235.0 325 43.1
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.9e-59 233.0 325 42.2
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 3.8e-59 232.6 325 40.9
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 5.0e-59 232.3 257 51.4
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 5.0e-59 232.3 325 41.2
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 8.5e-59 231.5 330 42.7
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 8.5e-59 231.5 329 44.1
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.1e-58 231.1 327 44.0
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.9e-58 230.3 250 50.8
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 2.5e-58 229.9 325 41.2
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 3.2e-58 229.6 330 43.3
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.2e-57 227.6 324 41.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.6e-57 227.3 326 44.5
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.1e-57 226.9 325 42.8
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.7e-57 226.5 327 41.0
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 3.6e-57 226.1 243 50.2
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 3.6e-57 226.1 251 48.6
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 4.7e-57 225.7 329 46.8
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 6.1e-57 225.3 326 42.9
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 6.1e-57 225.3 326 43.6
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 6.1e-57 225.3 326 44.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 8.0e-57 224.9 251 47.0
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.0e-56 224.6 245 50.2
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.4e-56 224.2 326 42.6
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.4e-56 224.2 310 42.9
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 3.0e-56 223.0 325 42.5
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 3.0e-56 223.0 336 40.8
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.1e-55 221.1 329 41.0
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.0e-55 220.3 309 43.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 2.0e-55 220.3 219 62.6
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 2.6e-55 219.9 331 40.8
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 3.3e-55 219.5 326 42.0
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.3e-54 217.6 325 41.5
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.3e-54 217.6 331 43.5
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.2e-54 216.9 324 41.0
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.8e-54 216.5 326 44.8
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.7e-54 216.1 210 60.5
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.2e-54 214.9 307 46.3
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.8e-53 213.8 244 48.0
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 2.4e-53 213.4 259 45.9
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 3.1e-53 213.0 242 47.1
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 9.1e-53 211.5 244 47.1
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 9.1e-53 211.5 331 39.3
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 3.5e-52 209.5 207 62.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.5e-52 209.5 339 38.6
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 7.7e-52 208.4 325 38.5
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.3e-51 207.6 294 40.5
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 2.2e-51 206.8 325 39.4
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 3.8e-51 206.1 354 44.4
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 6.1e-49 198.7 306 40.2
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 6.1e-49 198.7 263 41.8
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.4e-48 197.6 325 38.5
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 3.4e-47 193.0 255 43.1
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 4.4e-47 192.6 325 37.2
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 5.7e-47 192.2 325 38.8
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 9.8e-47 191.4 296 39.2
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 6.3e-46 188.7 256 42.2
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 8.3e-46 188.3 325 38.5
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.8e-45 187.2 212 50.5
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.2e-44 184.5 329 39.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.0e-44 183.7 224 46.0
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.0e-43 181.4 260 44.2
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 6.5e-43 178.7 248 42.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 9.5e-42 174.9 228 42.5
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.2e-41 174.5 305 38.7
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 4.7e-41 172.6 303 38.9
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.0e-41 171.8 234 44.4
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.0e-40 171.4 354 35.6
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.3e-40 170.2 234 44.4
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 8.8e-40 168.3 204 47.5
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 2.6e-39 166.8 309 35.6
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 3.4e-39 166.4 243 39.5
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 7.5e-39 165.2 294 38.8
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.7e-38 162.9 156 60.3
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.8e-37 160.6 258 37.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.2e-36 157.9 297 35.4
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 7.7e-36 155.2 253 41.1
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 7.7e-36 155.2 210 42.9
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 2.9e-35 153.3 196 43.4
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 5.0e-35 152.5 275 41.5
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.9e-34 150.6 258 38.4
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.3e-34 149.8 215 42.3
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 9.5e-34 148.3 287 35.5
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.2e-33 147.9 262 38.2
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.6e-33 147.5 296 34.5
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.8e-32 144.1 105 65.7
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.2e-32 142.5 219 41.6
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 6.8e-32 142.1 294 39.5
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.7e-30 136.3 189 43.9
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.7e-30 136.3 189 43.9
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.1e-26 124.8 159 45.9
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.2e-25 119.0 85 62.4
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.2e-25 119.0 174 39.7
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 4.4e-23 112.8 171 42.1
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 5.4e-21 105.9 78 65.4
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-19 101.7 106 50.0
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 3.0e-19 100.1 68 67.6
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.5e-18 97.8 156 38.5
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 8.9e-16 88.6 246 29.3
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.5e-15 87.8 148 39.9
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.5e-15 87.8 121 43.8
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 2.9e-14 83.6 122 44.3
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 6.4e-14 82.4 284 26.8
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.3e-10 69.7 221 27.6
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 4.3e-10 69.7 147 34.0
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 4.4e-07 59.7 70 44.3
CARHR209430 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.7e-06 57.8 37 75.7
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.2e-06 57.4 85 36.5


User provided reference genes

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