Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 8.2e-199 696.8 343 100.0
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 5.9e-189 664.1 336 98.2
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.9e-171 605.9 338 90.8
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 2.5e-171 605.5 336 91.1
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 5.2e-169 597.8 336 89.9
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 3.2e-166 588.6 336 89.3
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 2.5e-163 578.9 336 86.6
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 5.6e-163 577.8 339 86.7
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.8e-162 575.5 338 86.7
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 3.6e-162 575.1 340 86.2
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.4e-161 573.2 340 86.5
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.4e-161 573.2 338 87.3
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 1.8e-161 572.8 336 85.7
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 1.8e-161 572.8 338 86.4
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.3e-161 572.4 338 86.1
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.3e-161 572.4 338 86.1
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.2e-157 560.1 339 85.5
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 5.4e-150 534.6 336 80.1
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 2.1e-149 532.7 337 82.5
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 6.0e-149 531.2 336 79.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.8e-145 519.6 336 78.0
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 8.4e-143 510.8 338 76.6
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-142 510.0 337 77.4
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.9e-142 509.6 337 77.4
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.2e-142 508.8 338 76.3
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.6e-138 496.5 336 74.4
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 4.0e-137 491.9 336 74.7
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 9.3e-134 480.7 337 72.7
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.2e-133 480.3 341 72.4
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.1e-133 479.6 337 73.0
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-132 477.2 337 76.3
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.7e-132 476.5 338 72.5
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 3.0e-132 475.7 336 72.9
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 3.9e-132 475.3 279 81.4
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.5e-131 472.6 334 71.0
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 7.3e-131 471.1 336 71.4
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 7.3e-131 471.1 336 72.0
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.1e-130 469.5 293 76.1
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.8e-130 469.2 335 71.6
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 8.1e-130 467.6 337 70.6
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.1e-129 467.2 345 69.6
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.8e-129 466.5 285 78.6
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.8e-129 466.5 279 79.6
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 4.0e-129 465.3 301 76.1
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.5e-128 463.4 334 72.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 2.0e-128 463.0 337 70.0
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 2.0e-128 463.0 337 70.3
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.6e-128 462.6 341 70.1
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.4e-128 462.2 351 68.9
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 4.5e-128 461.8 329 71.4
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 5.8e-128 461.5 341 70.1
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 5.8e-128 461.5 337 69.4
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 5.8e-128 461.5 344 69.2
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.7e-127 459.9 344 69.8
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 2.2e-127 459.5 334 68.6
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 2.9e-127 459.1 297 76.4
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 2.9e-127 459.1 333 69.7
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 2.9e-127 459.1 337 68.5
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 4.9e-127 458.4 336 69.3
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 6.4e-127 458.0 337 69.4
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 8.4e-127 457.6 291 77.3
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.1e-126 457.2 336 68.8
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.4e-126 456.8 340 68.5
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.4e-126 456.8 286 77.3
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.9e-126 456.4 340 69.1
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 1.9e-126 456.4 341 68.3
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.2e-126 455.7 337 68.8
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 4.2e-126 455.3 292 76.0
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 5.4e-126 454.9 336 67.6
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 7.1e-126 454.5 323 70.9
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.2e-125 453.8 342 68.4
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 3.5e-125 452.2 331 74.6
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 4.6e-125 451.8 285 75.8
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.0e-124 450.7 354 65.8
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.0e-124 450.7 327 68.5
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 3.9e-124 448.7 342 68.1
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.9e-124 448.7 342 67.3
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.9e-124 448.7 291 75.9
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.1e-124 448.4 338 69.8
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 6.7e-124 448.0 343 68.2
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.1e-123 447.2 279 77.4
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 2.5e-123 446.0 340 65.6
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 3.3e-123 445.7 334 66.2
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 9.6e-123 444.1 340 66.2
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.3e-122 443.7 339 67.3
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.6e-122 443.4 292 73.6
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.1e-122 443.0 274 77.4
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 6.2e-122 441.4 336 67.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 6.2e-122 441.4 340 66.5
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 6.2e-122 441.4 334 67.7
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 8.1e-122 441.0 345 65.5
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.1e-121 440.7 268 76.5
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 4.0e-121 438.7 340 65.6
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 6.9e-121 438.0 359 63.5
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 9.0e-121 437.6 349 65.3
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.2e-120 437.2 345 66.4
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.5e-120 436.8 300 69.7
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 4.5e-120 435.3 309 69.3
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 7.6e-120 434.5 334 66.2
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 9.9e-120 434.1 342 65.8
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-119 433.7 337 67.4
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 3.8e-119 432.2 289 72.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 3.8e-119 432.2 340 64.4
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.9e-118 429.9 288 72.6
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.9e-118 429.9 337 65.3
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 3.2e-118 429.1 336 66.7
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.8e-116 423.3 274 75.5
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 2.5e-115 419.5 278 72.3
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 5.6e-115 418.3 336 63.7
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 7.4e-115 417.9 277 72.9
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.6e-114 416.8 449 51.9
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.1e-113 414.1 329 65.3
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 9.0e-113 411.0 361 61.2
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 2.0e-112 409.8 266 75.6
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.3e-106 390.6 360 59.7
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 9.0e-105 384.4 257 71.2
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.0e-100 370.9 260 70.0
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 4.8e-98 362.1 298 62.4
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 1.5e-96 357.1 244 70.5
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 3.2e-94 349.4 339 57.2
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 7.2e-94 348.2 259 69.1
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.6e-91 339.7 263 63.5
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 5.7e-91 338.6 261 63.2
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.2e-90 336.7 262 64.9
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.0e-88 330.1 217 72.4
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.6e-85 320.5 261 59.8
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 5.3e-81 305.4 264 59.5
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.4e-76 290.8 260 58.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 2.9e-71 273.1 163 79.8
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.7e-63 247.3 234 56.0
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 6.1e-61 238.8 135 83.0
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 9.5e-54 214.9 153 68.0
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-53 213.4 151 72.2
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.9e-50 203.4 343 40.8
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 3.9e-47 193.0 151 67.5
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-44 184.5 151 66.2
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.4e-41 174.5 104 76.0
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 6.0e-40 169.1 94 81.9
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 6.0e-40 169.1 125 63.2
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-39 166.0 151 59.6
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.1e-36 156.8 108 66.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 2.4e-20 104.0 75 66.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-19 99.8 71 69.0
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 4.4e-19 99.8 71 69.0
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 7.6e-19 99.0 72 65.3
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.0e-15 88.6 45 88.9
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.3e-15 87.4 45 88.9
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 3.9e-15 86.7 44 90.9
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 3.1e-12 77.0 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.1e-12 77.0 35 91.4
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.3e-10 71.6 39 87.2
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.4e-09 67.4 37 86.5
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 5.1e-07 59.7 51 60.8
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.1e-06 58.5 31 90.3
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 1.9e-06 57.8 58 53.4


User provided reference genes

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