Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 4.3e-37 157.5 82 100.0
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 4.3e-37 157.5 82 100.0
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 4.3e-37 157.5 82 100.0
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 9.6e-37 156.4 82 98.8
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 2.0e-34 148.7 71 94.4
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 7.1e-32 140.2 71 90.1
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 7.8e-31 136.7 71 88.7
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 1.3e-30 136.0 71 87.3
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 1.3e-30 136.0 71 87.3
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 1.3e-30 136.0 71 87.3
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 1.3e-30 136.0 71 87.3
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 3.0e-30 134.8 71 87.3
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 3.0e-30 134.8 71 87.3
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 8.7e-30 133.3 71 85.9
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.9e-24 115.5 71 78.9
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.9e-24 115.5 71 78.9
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 5.4e-24 114.0 71 78.9
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 4.0e-19 97.8 72 69.4
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 1.2e-18 96.3 71 67.6
A03p35970 Brassica napus HOM05D002160 ORTHO05D002012 1.2e-18 96.3 72 69.4
C03p43610 Brassica napus HOM05D002160 ORTHO05D002012 1.2e-18 96.3 72 69.4
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.5e-18 95.9 72 68.1
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.6e-18 95.1 72 68.1
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.6e-18 95.1 74 67.6
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 7.6e-18 93.6 72 66.7
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 1.0e-17 93.2 73 65.8
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 2.2e-17 92.0 72 68.1
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 2.2e-17 92.0 72 66.7
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 3.8e-17 91.3 72 68.1
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 4.9e-17 90.9 72 66.7
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 4.9e-17 90.9 72 66.7
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 8.4e-17 90.1 73 67.1
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.4e-16 89.4 72 65.3
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.9e-16 89.0 72 66.7
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 1.9e-16 89.0 72 65.3
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 1.9e-16 89.0 72 65.3
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 3.2e-16 88.2 72 65.3
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 3.2e-16 88.2 72 65.3
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 9.3e-16 86.7 72 65.3
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 1.3e-14 82.8 72 62.5
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.8e-14 82.4 72 62.5
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 6.7e-14 80.5 73 63.0
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.1e-13 79.7 66 60.6
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 1.5e-13 79.3 72 61.1
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 2.5e-13 78.6 73 61.6
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.7e-13 77.4 70 58.6
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 4.8e-12 74.3 68 57.4
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.1e-11 73.2 72 56.9
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 4.0e-11 71.2 74 60.8
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.6e-10 68.6 69 55.1
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.4e-10 68.2 72 48.6
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 3.4e-10 68.2 72 52.8
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 4.5e-10 67.8 72 54.2
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 5.8e-10 67.4 70 54.3
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 5.8e-10 67.4 70 54.3
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 5.8e-10 67.4 72 52.8
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 5.8e-10 67.4 72 52.8
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.0e-09 66.6 72 50.0
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.0e-09 66.6 72 50.0
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.0e-09 66.6 75 46.7
BcaC09g48081 Brassica carinata HOM05D002269 ORTHO05D002421 1.3e-09 66.2 49 69.4
BolC1t05454H Brassica oleracea HOM05D002269 ORTHO05D002421 1.3e-09 66.2 49 69.4
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.7e-09 65.9 72 50.0
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.9e-09 65.1 68 58.8
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 3.8e-09 64.7 71 53.5
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.8e-09 64.7 73 56.2
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 3.8e-09 64.7 72 51.4
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.0e-09 64.3 72 52.8
MBI13_g34921_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 5.0e-09 64.3 47 66.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 8.4e-09 63.5 74 52.7
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 8.4e-09 63.5 72 50.0
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 1.1e-08 63.2 69 50.7
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.1e-08 63.2 70 54.3
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 1.1e-08 63.2 72 47.2
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.1e-08 63.2 73 52.1
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 1.1e-08 63.2 73 52.1
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-08 62.8 71 50.7
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.4e-08 62.8 72 51.4
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 1.4e-08 62.8 72 51.4
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.9e-08 62.4 71 56.3
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.9e-08 62.4 73 52.1
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.9e-08 62.4 72 51.4
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 2.5e-08 62.0 72 48.6
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.5e-08 62.0 72 51.4
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.2e-08 61.6 72 51.4
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.2e-08 61.6 73 54.8
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 5.5e-08 60.8 69 47.8
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 5.5e-08 60.8 69 47.8
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 5.5e-08 60.8 72 51.4
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.5e-08 60.8 76 52.6
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 5.5e-08 60.8 69 50.7
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 5.5e-08 60.8 72 48.6
CANSAT54G0665 Cannabis sativa HOM05D002160 ORTHO05D002012 7.1e-08 60.5 71 49.3
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 7.1e-08 60.5 72 50.0
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.1e-08 60.5 72 52.8
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 7.1e-08 60.5 74 47.3
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 9.3e-08 60.1 72 52.8
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 9.3e-08 60.1 72 52.8
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 9.3e-08 60.1 72 52.8
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 9.3e-08 60.1 71 49.3
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 1.2e-07 59.7 73 50.7
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.2e-07 59.7 72 51.4
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.2e-07 59.7 72 51.4
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.6e-07 59.3 61 52.5
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.1e-07 58.9 72 47.2
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.1e-07 58.9 72 50.0
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.1e-07 58.9 72 48.6
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 3.5e-07 58.2 72 51.4
Migut.J00330 Erythranthe guttata HOM05D002160 ORTHO05D002012 3.5e-07 58.2 75 44.0
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 4.6e-07 57.8 75 45.3
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 4.6e-07 57.8 71 52.1
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 6.1e-07 57.4 72 47.2
HanXRQChr03g0070901 Helianthus annuus HOM05D002160 ORTHO05D002012 6.1e-07 57.4 68 47.1
ECA240G1164 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.0e-06 56.6 68 47.1
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.8e-06 55.8 72 50.0
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.8e-06 55.8 72 52.8
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.8e-06 55.8 73 45.2
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 1.8e-06 55.8 48 56.2
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 3.0e-06 55.1 72 48.6
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 3.0e-06 55.1 74 47.3
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 3.0e-06 55.1 72 51.4
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 3.9e-06 54.7 71 49.3
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 3.9e-06 54.7 75 48.0
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 5.1e-06 54.3 46 58.7
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 6.7e-06 53.9 69 44.9
CANSAT54G1607 Cannabis sativa HOM05D002160 ORTHO05D002012 8.7e-06 53.5 66 40.9
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 8.7e-06 53.5 48 56.2
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 8.7e-06 53.5 68 47.1
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.7e-06 53.5 72 52.8


User provided reference genes

Program Settings