Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1535.4 789 100.0
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1463.4 804 95.4
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1461.0 804 95.4
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1417.9 812 92.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1416.7 806 92.6
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1416.0 806 92.4
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1414.1 811 91.7
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1402.1 808 91.6
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1399.4 808 91.0
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1381.3 807 89.7
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1278.5 808 83.9
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1221.1 808 79.0
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1219.5 808 78.8
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1212.6 806 78.9
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1212.6 816 78.7
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1210.7 807 78.8
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1209.9 807 78.7
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1198.7 811 77.6
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1197.6 809 77.5
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1197.2 809 77.4
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1195.6 805 77.9
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1194.9 808 77.5
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1194.5 803 78.1
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1193.3 808 78.1
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1192.9 808 78.1
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1191.4 812 77.2
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1190.6 806 77.7
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1190.3 808 78.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1187.9 808 77.6
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1185.6 807 77.7
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1184.1 809 76.5
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1183.7 812 77.0
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1182.9 808 77.2
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1182.5 806 77.9
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1182.5 805 77.9
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1180.6 818 76.5
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1180.2 830 76.0
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1179.5 806 77.3
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1179.1 831 75.2
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1179.1 806 77.7
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1179.1 804 77.2
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1178.7 815 76.8
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1177.5 806 77.0
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1177.2 806 77.2
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1176.0 831 75.1
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1175.6 808 76.0
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1175.6 805 77.8
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1175.6 820 76.0
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1175.2 812 76.0
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1174.1 808 76.2
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1173.7 807 77.0
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1173.3 806 77.0
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1172.1 810 76.4
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1172.1 806 76.6
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1171.0 813 74.8
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1170.6 830 75.5
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1165.6 849 73.6
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1163.7 806 75.4
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1162.5 849 73.6
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1161.7 853 73.3
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1161.7 808 76.1
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1160.2 805 75.7
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1159.8 853 73.0
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1159.8 802 75.3
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1157.5 859 72.3
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1156.7 807 75.6
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1156.4 862 72.3
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1155.6 809 75.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1153.7 805 74.7
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1151.3 806 75.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1151.0 802 75.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1150.6 809 75.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1150.6 805 74.9
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1149.8 811 75.2
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1144.8 804 74.9
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1144.0 804 74.6
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1143.6 810 74.1
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1143.3 804 73.8
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1143.3 809 75.6
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1142.5 805 74.2
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1142.1 799 75.5
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1140.2 806 74.2
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1137.1 806 73.9
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1135.9 809 74.5
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1135.9 813 74.2
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1135.2 809 73.8
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1134.8 804 74.1
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1133.6 808 74.8
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1133.6 807 74.2
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1133.2 840 71.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1133.2 807 74.1
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1132.9 807 73.9
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1132.5 806 74.3
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1131.3 809 73.7
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1129.8 808 74.4
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1127.9 863 71.1
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1124.8 801 73.2
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1124.4 865 70.2
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1123.2 804 73.6
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1121.7 808 73.4
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1118.6 799 74.0
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1118.2 788 75.1
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1115.9 808 74.3
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1114.4 808 72.9
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1114.0 865 69.1
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1114.0 812 72.4
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1112.4 834 71.9
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1105.5 801 72.9
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1101.7 788 74.6
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1100.9 818 71.9
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1100.9 803 72.4
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1096.6 804 71.5
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1093.2 826 72.3
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1087.8 805 71.1
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1085.9 804 70.8
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1079.3 805 72.2
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 1.1e-311 1073.2 803 70.6
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 1.4e-310 1069.3 806 72.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 5.3e-310 1067.4 809 69.8
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 2.6e-309 1065.1 781 72.7
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 4.2e-307 1057.7 806 69.5
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 2.0e-304 1048.9 736 75.8
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 9.4e-299 1030.0 809 70.1
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 7.5e-280 967.2 747 70.7
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 5.6e-275 951.0 813 66.2
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 1.9e-270 936.0 700 72.3
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 6.8e-265 917.5 807 64.1
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.5e-261 905.2 538 83.8
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 2.1e-237 826.2 549 75.8
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.3e-223 780.4 804 53.1
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 6.5e-223 778.1 675 66.8
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 7.9e-221 771.2 565 73.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 6.7e-220 768.1 796 57.4
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.2e-207 726.5 816 50.2
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 4.2e-198 695.7 520 72.3
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.4e-185 653.3 431 77.3
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 2.9e-175 619.8 308 99.0
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 4.2e-174 615.9 308 98.4
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 6.3e-170 602.1 446 74.4
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.3e-167 593.6 450 72.0
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 2.3e-164 583.6 445 74.2
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.8e-163 578.9 359 80.5
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 2.0e-160 570.5 451 68.7
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.2e-131 474.9 305 76.1
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 9.3e-129 465.3 362 72.1
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.6e-115 420.6 491 51.7
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 9.3e-113 412.1 355 66.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 9.3e-113 412.1 284 72.9
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 7.4e-94 349.4 223 75.8
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 2.0e-86 324.7 690 35.7
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 3.6e-80 303.9 203 73.9
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.5e-73 282.0 183 75.4
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.2e-67 262.3 426 38.7
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 7.2e-65 253.1 192 67.7
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 4.7e-64 250.4 280 57.1
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 4.7e-64 250.4 144 84.7
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.6e-54 218.0 187 63.6
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-52 212.6 254 55.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 7.8e-51 206.5 130 80.0
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 3.3e-49 201.1 118 87.3
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 5.8e-46 190.3 201 55.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.7e-45 187.6 125 73.6
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 2.9e-37 161.4 92 89.1
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 8.3e-29 133.3 86 75.6
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 1.1e-28 132.9 91 70.3
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 1.1e-28 132.9 91 70.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-20 106.3 78 70.5
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 1.3e-18 99.4 87 58.6
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 3.3e-17 94.7 47 83.0
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.3e-16 92.8 59 72.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.9e-09 68.9 101 48.5


User provided reference genes

Program Settings