Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 7.3e-59 230.3 114 100.0
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 3.5e-53 211.5 114 91.2
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 3.5e-53 211.5 114 91.2
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.3e-52 209.5 114 89.5
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.3e-52 209.5 114 89.5
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 5.0e-52 207.6 114 88.6
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 2.0e-48 195.7 114 83.3
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 3.5e-45 184.9 114 82.5
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 3.5e-45 184.9 114 82.5
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 3.9e-44 181.4 114 81.6
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 4.3e-43 177.9 115 77.4
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 8.1e-42 173.7 114 78.1
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 7.5e-40 167.2 116 75.0
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.2e-39 165.6 110 77.3
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 3.0e-36 155.2 115 71.3
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 7.3e-35 150.6 122 67.2
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 1.6e-34 149.4 98 80.6
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 2.4e-30 135.6 124 58.9
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 6.4e-15 84.3 100 50.0
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 9.3e-14 80.5 111 45.9
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.6e-13 79.7 84 52.4
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 2.1e-13 79.3 112 42.0
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 3.5e-13 78.6 62 64.5
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 6.0e-13 77.8 96 46.9
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 1.0e-12 77.0 125 39.2
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 2.3e-12 75.9 87 51.7
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 5.1e-12 74.7 96 45.8
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 8.7e-12 73.9 120 42.5
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 8.7e-12 73.9 113 39.8
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 8.7e-12 73.9 113 39.8
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.1e-11 73.6 76 48.7
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 3.3e-11 72.0 82 51.2
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 4.3e-11 71.6 113 40.7
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 5.6e-11 71.2 94 47.9
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 7.4e-11 70.9 123 42.3
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 9.6e-11 70.5 93 48.4
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 9.6e-11 70.5 85 44.7
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 1.6e-10 69.7 82 50.0
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 2.1e-10 69.3 66 59.1
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 2.1e-10 69.3 126 38.9
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 2.1e-10 69.3 126 38.9
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 2.1e-10 69.3 79 48.1
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 3.6e-10 68.6 93 44.1
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 4.8e-10 68.2 112 37.5
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 4.8e-10 68.2 93 46.2
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 6.2e-10 67.8 130 38.5
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 1.4e-09 66.6 72 54.2
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.4e-09 66.6 92 45.7
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.8e-09 66.2 102 45.1
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.4e-09 65.9 106 38.7
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 3.1e-09 65.5 80 46.2
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 4.0e-09 65.1 74 51.4
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 5.3e-09 64.7 117 38.5
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 5.3e-09 64.7 114 43.0
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 6.9e-09 64.3 95 45.3
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 6.9e-09 64.3 96 41.7
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 9.0e-09 63.9 76 47.4
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 1.2e-08 63.5 52 63.5
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 1.2e-08 63.5 115 37.4
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 1.2e-08 63.5 99 38.4
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 1.5e-08 63.2 79 50.6
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 1.5e-08 63.2 91 40.7
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.0e-08 62.8 68 50.0
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 2.0e-08 62.8 68 50.0
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 2.6e-08 62.4 76 47.4
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.4e-08 62.0 63 52.4
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.4e-08 62.0 106 41.5
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 4.5e-08 61.6 93 41.9
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 7.6e-08 60.8 66 48.5
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 7.6e-08 60.8 51 60.8
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 7.6e-08 60.8 57 52.6
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 1.7e-07 59.7 79 40.5
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.2e-07 59.3 72 45.8
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 5.5e-06 54.7 52 53.8
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 5.5e-06 54.7 54 48.1
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 5.5e-06 54.7 54 48.1
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 9.3e-06 53.9 55 50.9


User provided reference genes

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