Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06963 Brassica carinata HOM05D005145 ORTHO05D006062 9.3e-53 209.9 105 100.0
BcaB01g00448 Brassica carinata HOM05D005145 ORTHO05D006062 1.9e-50 202.2 105 95.2
C08p27330 Brassica napus HOM05D005145 ORTHO05D006062 1.9e-50 202.2 105 95.2
A09p45140 Brassica napus HOM05D005145 ORTHO05D006062 2.5e-50 201.8 105 96.2
BolC8t50350H Brassica oleracea HOM05D005145 ORTHO05D006062 2.5e-50 201.8 105 96.2
BraA09t39975Z Brassica rapa HOM05D005145 ORTHO05D006062 2.5e-50 201.8 105 96.2
A03p48650 Brassica napus HOM05D005145 ORTHO05D006062 1.7e-46 189.1 106 91.5
Sp5g10230 Schrenkiella parvula HOM05D005145 ORTHO05D006062 1.7e-46 189.1 105 91.4
BraA03t13968Z Brassica rapa HOM05D005145 ORTHO05D006062 8.5e-46 186.8 106 90.6
Thhalv10010511m.g Eutrema salsugineum HOM05D005145 ORTHO05D006062 2.5e-45 185.3 105 88.6
BcaC06g33379 Brassica carinata HOM05D005145 ORTHO05D006062 4.2e-45 184.5 106 89.6
Carub.0003s2169 Capsella rubella HOM05D005145 ORTHO05D006062 4.2e-45 184.5 105 87.6
AL3G35760 Arabidopsis lyrata HOM05D005145 ORTHO05D006062 2.1e-44 182.2 105 85.7
C07p46760 Brassica napus HOM05D005145 ORTHO05D006062 1.8e-43 179.1 106 89.6
BolC7t45194H Brassica oleracea HOM05D005145 ORTHO05D006062 1.8e-43 179.1 106 89.6
AT3G21640 Arabidopsis thaliana HOM05D005145 ORTHO05D006062 2.0e-42 175.6 105 82.9
CARHR161760 Cardamine hirsuta HOM05D005145 ORTHO05D006062 8.2e-41 170.2 105 81.0
Aa31LG10G7130 Aethionema arabicum HOM05D005145 ORTHO05D006062 6.9e-40 167.2 106 81.1
Cpa.g.sc125.17 Carica papaya HOM05D005145 ORTHO05D006062 1.7e-30 136.0 104 66.3
Thecc.01G408700 Theobroma cacao HOM05D005145 ORTHO05D006062 3.8e-30 134.8 104 68.3
Dinv09339 Davidia involucrata HOM05D005145 ORTHO05D006062 8.5e-30 133.7 104 66.3
Gohir.A07G061000 Gossypium hirsutum HOM05D005145 ORTHO05D006062 8.5e-30 133.7 104 67.3
Duzib138G1043 Durio zibethinus HOM05D005145 ORTHO05D006062 1.9e-29 132.5 104 65.4
Gohir.D07G065700 Gossypium hirsutum HOM05D005145 ORTHO05D006062 1.9e-29 132.5 104 65.4
Gorai.001G069200 Gossypium raimondii HOM05D005145 ORTHO05D006062 1.9e-29 132.5 104 65.4
Actinidia31072 Actinidia chinensis HOM05D000961 ORTHO05D000841 7.2e-29 130.6 104 63.5
Dinv43426 Davidia involucrata HOM05D005145 ORTHO05D006062 7.2e-29 130.6 104 64.4
SalBow1G5123 Salvia bowleyana HOM05D005145 ORTHO05D006062 7.2e-29 130.6 104 62.5
SGA_v2.0_scaffold4G02519 Striga asiatica HOM05D005145 ORTHO05D006062 7.2e-29 130.6 104 62.5
Actinidia28555 Actinidia chinensis HOM05D005145 ORTHO05D006062 9.4e-29 130.2 104 63.5
MSTRG.17025 Avicennia marina HOM05D005145 ORTHO05D006062 9.4e-29 130.2 104 63.5
Eucgr.G03367 Eucalyptus grandis HOM05D005145 ORTHO05D006062 9.4e-29 130.2 104 64.4
Nn7g36253 Nelumbo nucifera HOM05D005145 ORTHO05D006062 1.2e-28 129.8 104 64.4
QL04p008544 Quercus lobata HOM05D005145 ORTHO05D006062 2.7e-28 128.6 103 61.2
GSVIVG01032135001 Vitis vinifera HOM05D005145 ORTHO05D006062 2.7e-28 128.6 104 65.4
COL.COLO4_04870 Corchorus olitorius HOM05D005145 ORTHO05D006062 4.7e-28 127.9 106 65.1
Migut.B01287 Erythranthe guttata HOM05D005145 ORTHO05D006062 4.7e-28 127.9 104 61.5
Peaxi162Scf00744g00356 Petunia axillaris HOM05D005145 ORTHO05D006062 4.7e-28 127.9 104 64.4
CANSAT35G1224 Cannabis sativa HOM05D005145 ORTHO05D006062 6.1e-28 127.5 104 63.5
Rhsim07G0056700 Rhododendron simsii HOM05D000961 ORTHO05D000841 6.1e-28 127.5 104 62.5
Prupe.2G017100 Prunus persica HOM05D005145 ORTHO05D006062 8.0e-28 127.1 104 63.5
TAR636G0099 Trochodendron aralioides HOM05D005145 ORTHO05D006062 8.0e-28 127.1 104 64.4
TWI09G1580 Tripterygium wilfordii HOM05D005145 ORTHO05D006062 1.0e-27 126.7 104 63.5
Cc02_g28150 Coffea canephora HOM05D005145 ORTHO05D006062 1.8e-27 125.9 104 59.6
Nitab4.5_0000707g0300 Nicotiana tabacum HOM05D005145 ORTHO05D006062 1.8e-27 125.9 104 64.4
Ciclev10031893m.g Citrus clementina HOM05D005145 ORTHO05D006062 2.3e-27 125.6 104 63.5
EL10Ac2g04343 Beta vulgaris HOM05D005145 ORTHO05D006062 3.0e-27 125.2 104 62.5
Nitab4.5_0002918g0060 Nicotiana tabacum HOM05D005145 ORTHO05D006062 3.0e-27 125.2 104 64.4
QL04p008103 Quercus lobata HOM05D005145 ORTHO05D006062 3.0e-27 125.2 103 60.2
BcaC06g33022 Brassica carinata HOM05D005145 ORTHO05D006062 5.2e-27 124.4 67 95.5
MBI15_g03642_MAGBIO Magnolia biondii HOM05D005145 ORTHO05D006062 5.2e-27 124.4 104 62.5
HanXRQChr10g0304331 Helianthus annuus HOM05D005145 ORTHO05D006062 6.7e-27 124.0 104 57.7
Sc11g0009070 Simmondsia chinensis HOM05D005145 ORTHO05D006062 8.8e-27 123.6 104 61.5
Lj7C573G7 Lonicera japonica HOM05D005145 ORTHO05D006062 1.1e-26 123.2 105 61.9
Psat7g183320 Pisum sativum HOM05D005145 ORTHO05D006062 1.1e-26 123.2 107 60.7
Phvul.011G012900 Phaseolus vulgaris HOM05D005145 ORTHO05D006062 1.5e-26 122.9 107 60.7
Sopen01g034400 Solanum pennellii HOM05D005145 ORTHO05D006062 1.5e-26 122.9 104 63.5
PGSC0003DMG400006860 Solanum tuberosum HOM05D005145 ORTHO05D006062 1.5e-26 122.9 104 63.5
VMungo1127G0627 Vigna mungo HOM05D005145 ORTHO05D006062 1.5e-26 122.9 107 60.7
Aqoxy2G00161 Aquilegia oxysepala HOM05D005145 ORTHO05D006062 2.0e-26 122.5 101 61.4
Dinv09243 Davidia involucrata HOM05D005145 ORTHO05D006062 2.0e-26 122.5 104 62.5
Dinv22084 Davidia involucrata HOM05D005145 ORTHO05D006062 2.0e-26 122.5 104 62.5
Solyc01g087470.3 Solanum lycopersicum HOM05D005145 ORTHO05D006062 2.0e-26 122.5 104 63.5
AUR62023079 Chenopodium quinoa HOM05D005145 ORTHO05D006062 2.6e-26 122.1 104 60.6
RcHm_v2.0_Chr1g0317011 Rosa chinensis HOM05D005145 ORTHO05D006062 2.6e-26 122.1 104 62.5
FAN03G2501 Fragaria x ananassa HOM05D005145 ORTHO05D006062 3.3e-26 121.7 104 61.5
Sc23g0005930 Simmondsia chinensis HOM05D005145 ORTHO05D006062 3.3e-26 121.7 104 61.5
Ah.13g067830 Amaranthus hybridus HOM05D005145 ORTHO05D006062 4.4e-26 121.3 104 62.5
AUR62009396 Chenopodium quinoa HOM05D005145 ORTHO05D006062 5.7e-26 120.9 104 59.6
Haze_03177 Corylus avellana HOM05D005145 ORTHO05D006062 5.7e-26 120.9 104 63.5
FvH4_7g01260 Fragaria vesca HOM05D005145 ORTHO05D006062 5.7e-26 120.9 104 61.5
CAN.G219.41 Capsicum annuum HOM05D005145 ORTHO05D006062 9.7e-26 120.2 104 62.5
FAN01G2312 Fragaria x ananassa HOM05D005145 ORTHO05D006062 9.7e-26 120.2 104 60.6
FAN10G0323 Fragaria x ananassa HOM05D005145 ORTHO05D006062 9.7e-26 120.2 104 60.6
Lj3g0020185 Lotus japonicus HOM05D005145 ORTHO05D006062 9.7e-26 120.2 107 60.7
DCAR_029683 Daucus carota HOM05D005145 ORTHO05D006062 1.3e-25 119.8 105 61.9
Glyma.12G008300 Glycine max HOM05D005145 ORTHO05D006062 1.3e-25 119.8 107 60.7
MD07G1015600 Malus domestica HOM05D005145 ORTHO05D006062 1.3e-25 119.8 104 61.5
Manes.07G007200 Manihot esculenta HOM05D005145 ORTHO05D006062 1.3e-25 119.8 109 61.5
Glyma.09G228200 Glycine max HOM05D005145 ORTHO05D006062 1.7e-25 119.4 107 60.7
CiPaw.13G006700 Carya illinoinensis HOM05D005145 ORTHO05D006062 2.2e-25 119.0 104 60.6
Cfa010794 Carpinus fangiana HOM05D005145 ORTHO05D006062 2.8e-25 118.6 104 63.5
CiPaw.14G001300 Carya illinoinensis HOM05D005145 ORTHO05D006062 2.8e-25 118.6 104 60.6
FAN06G2757 Fragaria x ananassa HOM05D005145 ORTHO05D006062 2.8e-25 118.6 104 60.6
PGR083G1973 Punica granatum HOM05D005145 ORTHO05D006062 2.8e-25 118.6 103 58.3
Dinv30224 Davidia involucrata HOM05D007544 ORTHO05D006062 3.7e-25 118.2 104 61.5
Hund05940 Selenicereus undatus HOM05D005145 ORTHO05D006062 3.7e-25 118.2 104 61.5
MD02G1308400 Malus domestica HOM05D005145 ORTHO05D006062 6.3e-25 117.5 104 61.5
Sed0004407 Sechium edule HOM05D005145 ORTHO05D006062 6.3e-25 117.5 105 60.0
Sabra16G0162500 Salix brachista HOM05D005145 ORTHO05D006062 1.1e-24 116.7 111 57.7
TAR369G0045 Trochodendron aralioides HOM05D005145 ORTHO05D006062 1.1e-24 116.7 104 61.5
HPP92_009711 Vanilla planifolia HOM05D005145 ORTHO05D006062 2.4e-24 115.5 104 59.6
PSO478G3750 Papaver somniferum HOM05D005145 ORTHO05D006062 3.1e-24 115.2 105 57.1
arahy.Tifrunner.gnm1.ann1.TWX3XF Arachis hypogaea HOM05D005145 ORTHO05D006062 4.1e-24 114.8 108 57.4
Sed0001165 Sechium edule HOM05D005145 ORTHO05D006062 4.1e-24 114.8 105 59.0
arahy.Tifrunner.gnm1.ann1.HLL15Q Arachis hypogaea HOM05D005145 ORTHO05D006062 5.3e-24 114.4 108 57.4
Ca_19569_v3 Cicer arietinum L. HOM05D005145 ORTHO05D006062 5.3e-24 114.4 107 56.1
CsaV3_3G032060 Cucumis sativus L. HOM05D005145 ORTHO05D006062 1.2e-23 113.2 98 61.2
Medtr4g039430 Medicago truncatula HOM05D005145 ORTHO05D006062 1.2e-23 113.2 106 55.7
Os12g0145500 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 1.2e-23 113.2 90 63.3
PSO782G5523 Papaver somniferum HOM05D005145 ORTHO05D006062 2.0e-23 112.5 105 55.2
Os11g0148300 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 3.5e-23 111.7 104 55.8
CDE05G1020 Ceratophyllum demersum HOM05D005145 ORTHO05D006062 4.5e-23 111.3 104 55.8
Potri.001G264400 Populus trichocarpa HOM05D005145 ORTHO05D006062 5.9e-23 110.9 113 54.0
ClCG10G012290 Citrullus lanatus HOM05D005145 ORTHO05D006062 7.7e-23 110.5 105 57.1
TPR.G30176 Trifolium pratense HOM05D005145 ORTHO05D006062 7.7e-23 110.5 107 56.1
Sabra09G0043600 Salix brachista HOM05D005145 ORTHO05D006062 1.3e-22 109.8 111 56.8
MELO3C023984.2 Cucumis melo HOM05D005145 ORTHO05D006062 2.2e-22 109.0 105 57.1
Potri.009G059200 Populus trichocarpa HOM05D005145 ORTHO05D006062 2.2e-22 109.0 109 55.0
THA.LOC104801977 Tarenaya hassleriana HOM05D005145 ORTHO05D006062 2.2e-22 109.0 104 58.7
Lalb_Chr01g0000411 Lupinus albus HOM05D005145 ORTHO05D006062 5.0e-22 107.8 107 57.0
Lsat_1_v5_gn_1_105761 Lactuca sativa HOM05D005145 ORTHO05D006062 6.5e-22 107.5 90 57.8
Zm00001eb092870 Zea mays HOM05D005145 ORTHO05D006062 1.9e-21 105.9 104 54.8
SEGI_24644 Sequoiadendron giganteum HOM05D005145 ORTHO05D006062 4.2e-21 104.8 104 51.9
Atru.chr11.2602 Acer truncatum HOM05D005145 ORTHO05D006062 9.4e-21 103.6 93 57.0
Oeu014585.1 Olea europaea HOM05D005145 ORTHO05D006062 2.1e-20 102.4 97 57.7
Mapoly0068s0080 Marchantia polymorpha HOM05D005145 ORTHO05D006062 6.1e-20 100.9 111 50.5
ATR0332G093 Amborella trichopoda HOM05D005145 ORTHO05D006062 4.4e-18 94.7 105 51.4
Pp3c11_5900 Physcomitrium patens HOM05D005145 ORTHO05D006062 9.8e-18 93.6 99 49.5
unitig_749.g14327 Utricularia gibba HOM05D005145 ORTHO05D006062 1.4e-16 89.7 64 67.2
Dinv01450 Davidia involucrata HOM05D007544 ORTHO05D006062 1.6e-15 86.3 64 68.8
Dinv18713 Davidia involucrata HOM05D016106 ORTHO05D000140 4.5e-15 84.7 60 68.3
PSO384G2090 Papaver somniferum HOM05D005145 ORTHO05D006062 4.5e-15 84.7 64 65.6
AagrBONN_evm.TU.Sc2ySwM_117.2788 Anthoceros agrestis HOM05D005145 ORTHO05D006062 1.0e-14 83.6 91 50.5
PSO339G1740 Papaver somniferum HOM05D005145 ORTHO05D006062 1.3e-14 83.2 64 64.1
SMO364G0452 Selaginella moellendorffii HOM05D005145 ORTHO05D006062 1.7e-14 82.8 100 43.0
Actinidia19403 Actinidia chinensis HOM05D005145 ORTHO05D006062 1.2e-12 76.6 61 60.7
CBR_g66761 Chara braunii HOM05D005145 ORTHO05D006062 3.0e-11 72.0 94 43.6
ECA248G1413 Erigeron canadensis HOM05D005145 ORTHO05D006062 1.2e-10 70.1 50 70.0
PRCOL_00004628 Prasinoderma coloniale HOM05D001046 ORTHO05D002934 1.6e-07 59.7 64 48.4


User provided reference genes

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