Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06911 Brassica carinata HOM05D000013 ORTHO05D009168 7.0e-43 176.8 84 100.0
BcaNung06912 Brassica carinata HOM05D000013 ORTHO05D009168 1.9e-32 142.1 67 100.0
BcaB03g15088 Brassica carinata HOM05D000013 ORTHO05D009168 2.8e-31 138.3 67 98.5
BraA07t31517Z Brassica rapa HOM05D000013 ORTHO05D009168 2.3e-30 135.2 67 94.0
BcaC08g46802 Brassica carinata HOM05D000013 ORTHO05D009168 5.2e-30 134.0 67 92.5
A07p39680 Brassica napus HOM05D000013 ORTHO05D009168 5.2e-30 134.0 67 92.5
C06p47970 Brassica napus HOM05D000013 ORTHO05D009168 5.2e-30 134.0 67 92.5
BolC6t39832H Brassica oleracea HOM05D000013 ORTHO05D009168 5.2e-30 134.0 67 92.5
Thhalv10018652m.g Eutrema salsugineum HOM05D000013 ORTHO05D009168 3.3e-24 114.8 69 82.6
Carub.0002s2058 Capsella rubella HOM05D000022 ORTHO05D009168 5.2e-22 107.5 67 80.6
CARHR066910 Cardamine hirsuta HOM05D000013 ORTHO05D009168 2.2e-20 102.1 71 76.1
AL2G33640 Arabidopsis lyrata HOM05D000013 ORTHO05D009168 8.3e-20 100.1 71 71.8
Sp5g29020 Schrenkiella parvula HOM05D000013 ORTHO05D009168 2.3e-17 92.0 53 84.9
Aa31sc1996G10 Aethionema arabicum HOM05D000013 ORTHO05D009168 9.9e-13 76.6 69 59.4
THA.LOC104813904 Tarenaya hassleriana HOM05D000054 ORTHO05D009168 6.4e-12 73.9 68 58.8
Gohir.A09G176800 Gossypium hirsutum HOM05D000022 ORTHO05D009168 9.2e-11 70.1 66 51.5
Gohir.D09G172400 Gossypium hirsutum HOM05D000022 ORTHO05D009168 1.6e-10 69.3 66 50.0
MD06G1217600 Malus domestica HOM05D000013 ORTHO05D009168 2.1e-10 68.9 65 55.4
MD14G1227800 Malus domestica HOM05D000022 ORTHO05D009168 2.1e-10 68.9 65 53.8
PGR083G2353 Punica granatum HOM05D000013 ORTHO05D009168 1.7e-09 65.9 63 54.0
Duzib205G0870 Durio zibethinus HOM05D000022 ORTHO05D009168 3.0e-09 65.1 66 50.0
Duzib084G0217 Durio zibethinus HOM05D000022 ORTHO05D009168 3.9e-09 64.7 66 50.0
Thecc.03G037200 Theobroma cacao HOM05D000013 ORTHO05D009168 1.9e-08 62.4 48 58.3
PSO017G5407 Papaver somniferum HOM05D000022 ORTHO05D009168 2.5e-08 62.0 66 50.0
Nitab4.5_0009087g0020 Nicotiana tabacum HOM05D000013 ORTHO05D009168 3.3e-08 61.6 62 50.0
GSVIVG01008309001 Vitis vinifera HOM05D000022 ORTHO05D009168 3.3e-08 61.6 63 50.8
Dinv15693 Davidia involucrata HOM05D014922 ORTHO05D029220 4.3e-08 61.2 63 49.2
CAN.G1425.18 Capsicum annuum HOM05D000013 ORTHO05D009168 7.3e-08 60.5 62 53.2
COL.COLO4_04900 Corchorus olitorius HOM05D000022 ORTHO05D009168 7.3e-08 60.5 55 49.1
Oeu001001.2 Olea europaea HOM05D000013 ORTHO05D009168 7.3e-08 60.5 48 60.4
Cc00_g11620 Coffea canephora HOM05D000013 ORTHO05D009168 1.2e-07 59.7 67 44.8
Eucgr.B00734 Eucalyptus grandis HOM05D000013 ORTHO05D009168 1.2e-07 59.7 54 53.7
MBI16_g05559_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D009168 2.8e-07 58.5 39 66.7
Oeu008239.1 Olea europaea HOM05D000013 ORTHO05D009168 2.8e-07 58.5 48 56.2
MSTRG.9272 Avicennia marina HOM05D000013 ORTHO05D009168 3.6e-07 58.2 64 46.9
Dinv28117 Davidia involucrata HOM05D000022 ORTHO05D009168 3.6e-07 58.2 63 46.0
ECA233G4831 Erigeron canadensis HOM05D000013 ORTHO05D009168 3.6e-07 58.2 52 51.9
RcHm_v2.0_Chr7g0185691 Rosa chinensis HOM05D000022 ORTHO05D009168 3.6e-07 58.2 72 47.2
TAR371G1046 Trochodendron aralioides HOM05D003195 ORTHO05D009168 3.6e-07 58.2 66 47.0
Cpa.g.sc3.493 Carica papaya HOM05D000013 ORTHO05D009168 4.7e-07 57.8 40 67.5
Cc04_g08660 Coffea canephora HOM05D000013 ORTHO05D154465 4.7e-07 57.8 60 48.3
HanXRQChr17g0558341 Helianthus annuus HOM05D000013 ORTHO05D009168 4.7e-07 57.8 61 47.5
Lj5C150T16 Lonicera japonica HOM05D000013 ORTHO05D009168 4.7e-07 57.8 62 45.2
QL10p025634 Quercus lobata HOM05D000054 ORTHO05D009168 4.7e-07 57.8 64 50.0
vmacro16440 Vaccinium macrocarpon HOM05D000022 ORTHO05D009168 4.7e-07 57.8 64 48.4
ClCG04G011060 Citrullus lanatus HOM05D026575 ORTHO05D028765 6.2e-07 57.4 57 49.1
MELO3C002092.2 Cucumis melo HOM05D000013 ORTHO05D009168 6.2e-07 57.4 63 49.2
DCAR_011358 Daucus carota HOM05D000013 ORTHO05D009168 6.2e-07 57.4 65 47.7
Rhsim12G0142900 Rhododendron simsii HOM05D000022 ORTHO05D009168 6.2e-07 57.4 64 46.9
Hma1.2p1_0653F.1_g196190 Hydrangea macrophylla HOM05D000013 ORTHO05D009168 8.1e-07 57.0 65 46.2
Potri.012G055500 Populus trichocarpa HOM05D000022 ORTHO05D009168 1.1e-06 56.6 49 55.1
SalBow1G6920 Salvia bowleyana HOM05D000013 ORTHO05D009168 1.4e-06 56.2 43 62.8
Ciclev10020197m.g Citrus clementina HOM05D000022 ORTHO05D009168 1.8e-06 55.8 53 54.7
Cc04_g08630 Coffea canephora HOM05D000013 ORTHO05D000011 1.8e-06 55.8 39 59.0
Cc00_g18750 Coffea canephora HOM05D000013 ORTHO05D000011 2.4e-06 55.5 72 44.4
Haze_18695 Corylus avellana HOM05D000022 ORTHO05D009168 2.4e-06 55.5 57 49.1
FAN02G2367 Fragaria x ananassa HOM05D000013 ORTHO05D000011 2.4e-06 55.5 64 45.3
Nitab4.5_0002906g0140 Nicotiana tabacum HOM05D000022 ORTHO05D009168 2.4e-06 55.5 62 45.2
Solyc03g119340.3 Solanum lycopersicum HOM05D000013 ORTHO05D009168 2.4e-06 55.5 62 43.5
Solyc07g053110.3 Solanum lycopersicum HOM05D000013 ORTHO05D010272 2.4e-06 55.5 37 62.2
arahy.Tifrunner.gnm1.ann1.01D3A3 Arachis hypogaea HOM05D000013 ORTHO05D009168 3.1e-06 55.1 65 44.6
arahy.Tifrunner.gnm1.ann1.G524VK Arachis hypogaea HOM05D000013 ORTHO05D009168 3.1e-06 55.1 65 44.6
CSS0039344 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D009168 3.1e-06 55.1 40 60.0
CiPaw.15G131800 Carya illinoinensis HOM05D000013 ORTHO05D009168 3.1e-06 55.1 50 52.0
Cc00_g18740 Coffea canephora HOM05D000013 ORTHO05D000011 3.1e-06 55.1 39 59.0
COL.COLO4_13053 Corchorus olitorius HOM05D000013 ORTHO05D000011 3.1e-06 55.1 44 56.8
PGSC0003DMG402005726 Solanum tuberosum HOM05D000013 ORTHO05D009168 3.1e-06 55.1 62 43.5
Prupe.3G226100 Prunus persica HOM05D000013 ORTHO05D000011 4.0e-06 54.7 45 57.8
Sed0016043 Sechium edule HOM05D000013 ORTHO05D009168 4.0e-06 54.7 39 69.2
Atru.chr9.864 Acer truncatum HOM05D000022 ORTHO05D009168 5.2e-06 54.3 66 43.9
CsaV3_1G006680 Cucumis sativus L. HOM05D000013 ORTHO05D009168 5.2e-06 54.3 67 49.3
Peaxi162Scf01090g00119 Petunia axillaris HOM05D000013 ORTHO05D000689 5.2e-06 54.3 55 47.3
CSS0019782 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D009168 6.9e-06 53.9 30 73.3
CANSAT19G0003 Cannabis sativa HOM05D000013 ORTHO05D009168 6.9e-06 53.9 64 43.8
Cc04_g08700 Coffea canephora HOM05D000013 ORTHO05D000011 6.9e-06 53.9 39 56.4
FAN13G0850 Fragaria x ananassa HOM05D003195 ORTHO05D009168 6.9e-06 53.9 63 50.8
Hund02383 Selenicereus undatus HOM05D000013 ORTHO05D009168 6.9e-06 53.9 38 63.2
Sopen03g038210 Solanum pennellii HOM05D000013 ORTHO05D009168 6.9e-06 53.9 43 53.5
PGSC0003DMG400011251 Solanum tuberosum HOM05D000013 ORTHO05D000011 6.9e-06 53.9 51 51.0
TWI60G0537 Tripterygium wilfordii HOM05D000013 ORTHO05D009168 6.9e-06 53.9 68 45.6
Aqoxy3G00257 Aquilegia oxysepala HOM05D000013 ORTHO05D009168 9.0e-06 53.5 31 71.0
Ca_25482_v3 Cicer arietinum L. HOM05D000013 ORTHO05D009168 9.0e-06 53.5 55 47.3
Ca_29725_v3 Cicer arietinum L. HOM05D000013 ORTHO05D009168 9.0e-06 53.5 55 47.3
FvH4_5g11890 Fragaria vesca HOM05D000022 ORTHO05D009168 9.0e-06 53.5 63 50.8
FAN04G2107 Fragaria x ananassa HOM05D003195 ORTHO05D003773 9.0e-06 53.5 31 71.0
FAN08G2993 Fragaria x ananassa HOM05D003195 ORTHO05D003773 9.0e-06 53.5 63 50.8
FAN18G4034 Fragaria x ananassa HOM05D003195 ORTHO05D003773 9.0e-06 53.5 63 50.8
FAN18G4239 Fragaria x ananassa HOM05D003195 ORTHO05D003773 9.0e-06 53.5 63 50.8
Gohir.D11G055200 Gossypium hirsutum HOM05D000168 ORTHO05D001942 9.0e-06 53.5 77 44.2
Nitab4.5_0000747g0020 Nicotiana tabacum HOM05D000013 ORTHO05D000011 9.0e-06 53.5 63 42.9
Peaxi162Scf00015g01033 Petunia axillaris HOM05D000022 ORTHO05D009168 9.0e-06 53.5 39 56.4
Sopen10g001420 Solanum pennellii HOM05D000013 ORTHO05D000011 9.0e-06 53.5 47 51.1


User provided reference genes

Program Settings