Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 4.1e-175 619.0 641 100.0
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 2.8e-131 473.4 623 85.2
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 1.1e-127 461.5 623 87.5
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 8.6e-117 425.2 623 84.9
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 8.6e-117 425.2 623 84.9
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 4.2e-87 326.6 644 78.4
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 1.2e-86 325.1 644 78.1
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 6.0e-86 322.8 645 77.5
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 3.7e-83 313.5 646 77.1
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 4.9e-80 303.1 205 88.3
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 9.0e-74 282.3 224 69.2
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 2.2e-64 251.1 638 72.4
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 2.4e-58 231.1 643 70.3
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 1.0e-32 146.0 193 43.5
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 1.7e-32 145.2 194 44.3
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 1.9e-31 141.7 206 43.7
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 4.7e-30 137.1 187 41.7
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 6.1e-30 136.7 180 43.3
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 1.8e-29 135.2 162 47.5
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 3.0e-29 134.4 210 41.4
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 2.0e-28 131.7 177 45.2
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 2.6e-28 131.3 188 41.0
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 3.4e-28 131.0 170 41.2
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 5.7e-28 130.2 170 41.2
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 5.7e-28 130.2 195 40.5
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 7.5e-28 129.8 199 43.7
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 2.8e-27 127.9 203 41.4
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 3.7e-27 127.5 178 39.9
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 6.3e-27 126.7 183 44.3
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 6.3e-27 126.7 188 42.6
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 6.3e-27 126.7 202 41.1
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 8.3e-27 126.3 168 42.9
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 1.4e-26 125.6 205 38.5
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 3.2e-26 124.4 173 43.9
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 3.2e-26 124.4 164 45.1
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 5.4e-26 123.6 202 40.1
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 7.0e-26 123.2 199 35.2
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 1.2e-25 122.5 177 41.2
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 3.5e-25 120.9 206 37.9
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 4.6e-25 120.6 188 41.5
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 2.9e-24 117.9 191 37.2
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 3.9e-24 117.5 197 38.6
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 6.6e-24 116.7 172 39.5
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 8.6e-24 116.3 179 39.7
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 8.6e-24 116.3 202 36.6
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 1.2e-22 112.5 174 40.2
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 2.1e-22 111.7 157 43.3
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 2.1e-22 111.7 157 43.3
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 2.8e-22 111.3 154 39.6
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 3.6e-22 110.9 157 42.7
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 4.7e-22 110.5 189 38.6
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 8.0e-22 109.8 150 41.3
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 5.2e-21 107.1 179 37.4
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 2.0e-20 105.1 193 36.3
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 4.4e-20 104.0 174 34.5
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 9.8e-20 102.8 175 40.6
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 1.4e-18 99.0 173 34.7
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.7e-17 94.7 165 33.9
TPR.G27557 Trifolium pratense HOM05D007763 ORTHO05D009537 3.5e-17 94.4 87 48.3
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 3.9e-16 90.9 141 31.9
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 6.6e-16 90.1 167 32.3
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 8.6e-16 89.7 109 44.0
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 1.5e-15 89.0 118 36.4
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 3.6e-14 84.3 151 33.8
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 8.1e-14 83.2 104 43.3
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 8.1e-14 83.2 85 44.7
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 1.5e-12 79.0 126 34.1
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 2.0e-12 78.6 178 32.6
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.6e-12 78.2 229 25.3
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 5.8e-12 77.0 156 34.0
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 7.5e-12 76.6 92 41.3
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 1.7e-11 75.5 104 40.4
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 1.9e-10 72.0 80 41.2
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 1.9e-10 72.0 134 39.6
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 2.4e-10 71.6 147 32.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 9.2e-10 69.7 234 25.2
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 9.2e-10 69.7 165 35.8
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 1.2e-09 69.3 126 34.9
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 2.1e-09 68.6 134 32.1
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 3.5e-09 67.8 176 27.8
Medtr3g037490 Medicago truncatula HOM05D007763 ORTHO05D009537 6.0e-09 67.0 63 50.8
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 1.3e-08 65.9 191 28.3
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 1.3e-08 65.9 69 40.6
Atru.chr12.1659 Acer truncatum HOM05D007763 ORTHO05D009537 2.3e-08 65.1 63 50.8
arahy.Tifrunner.gnm1.ann1.TF3CHY Arachis hypogaea HOM05D000981 ORTHO05D000845 5.1e-08 63.9 104 45.2
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 5.1e-08 63.9 139 31.7
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.5e-07 61.6 180 25.0
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 4.3e-07 60.8 193 26.9
Os09g0417500 Oryza sativa ssp. japonica HOM05D007763 ORTHO05D009537 4.3e-07 60.8 135 28.9
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 5.6e-07 60.5 228 26.3
vmacro17568 Vaccinium macrocarpon HOM05D007763 ORTHO05D009537 7.3e-07 60.1 79 35.4
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 9.5e-07 59.7 196 24.0
ECA246G2275 Erigeron canadensis HOM05D007763 ORTHO05D009537 9.5e-07 59.7 62 43.5
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 1.2e-06 59.3 135 29.6
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.2e-06 59.3 158 26.6
Nitab4.5_0004286g0010 Nicotiana tabacum HOM05D007763 ORTHO05D009537 1.2e-06 59.3 68 39.7
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 1.2e-06 59.3 62 41.9
Psat7g177640 Pisum sativum HOM05D007212 ORTHO05D009094 1.2e-06 59.3 155 29.0
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 1.6e-06 58.9 196 27.0
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 2.1e-06 58.5 145 30.3
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 2.1e-06 58.5 186 26.3
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 2.1e-06 58.5 126 32.5
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 2.1e-06 58.5 126 32.5
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.8e-06 58.2 91 31.9
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 3.6e-06 57.8 154 31.2
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 4.7e-06 57.4 157 26.8
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 4.7e-06 57.4 192 24.0
Nitab4.5_0003021g0070 Nicotiana tabacum HOM05D007763 ORTHO05D009537 8.1e-06 56.6 62 40.3
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 8.1e-06 56.6 146 27.4


User provided reference genes

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