Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 3.5e-101 371.7 200 100.0
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 1.2e-85 320.1 200 86.0
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 1.3e-84 316.6 200 85.5
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 9.4e-78 293.9 201 83.6
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 2.7e-77 292.4 203 78.3
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 6.7e-76 287.7 203 78.8
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 6.7e-76 287.7 203 78.8
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 1.1e-75 287.0 203 78.8
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 6.3e-74 281.2 203 77.8
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 1.4e-73 280.0 203 77.3
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 1.8e-73 279.6 201 79.1
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 1.8e-73 279.6 203 77.3
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 2.4e-73 279.3 201 79.1
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 1.8e-68 263.1 202 73.8
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 1.1e-65 253.8 201 68.7
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 5.9e-56 221.5 209 62.2
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 1.1e-54 217.2 200 60.5
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 2.7e-53 212.6 203 59.6
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 1.3e-50 203.8 202 58.9
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 4.5e-48 195.3 218 53.7
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 7.3e-22 108.2 176 40.9
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.4e-20 104.0 184 38.0
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.4e-20 104.0 200 35.5
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.1e-20 102.8 196 37.2
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.1e-20 102.8 193 36.3
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 4.0e-20 102.4 176 38.1
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 6.8e-20 101.7 200 36.5
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 3.4e-19 99.4 211 35.5
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 3.4e-19 99.4 164 39.6
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 4.4e-19 99.0 160 38.1
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 5.8e-19 98.6 198 33.8
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 7.5e-19 98.2 195 31.8
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 9.9e-19 97.8 190 35.3
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 9.9e-19 97.8 176 38.1
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 1.3e-18 97.4 163 39.9
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 1.3e-18 97.4 163 39.3
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 3.7e-18 95.9 158 39.2
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 4.9e-18 95.5 162 40.1
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 1.9e-17 93.6 190 34.7
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 1.9e-17 93.6 154 40.9
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.9e-17 93.6 162 40.1
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 3.2e-17 92.8 154 39.0
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 1.2e-16 90.9 182 39.0
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 2.1e-16 90.1 188 34.6
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 1.3e-15 87.4 177 35.0
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.7e-15 87.0 224 32.6
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 3.0e-15 86.3 184 34.8
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 5.1e-15 85.5 214 33.6
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 5.1e-15 85.5 162 37.0
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 8.6e-15 84.7 176 33.5
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.1e-14 84.3 176 32.4
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.1e-14 84.3 167 37.1
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 1.9e-14 83.6 191 33.5
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 1.9e-14 83.6 173 35.3
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 1.9e-14 83.6 187 35.3
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 1.9e-14 83.6 156 39.7
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 3.3e-14 82.8 191 34.6
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 4.3e-14 82.4 157 35.0
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 5.6e-14 82.0 149 36.9
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 5.6e-14 82.0 179 35.2
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.2e-13 80.9 176 32.4
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 2.8e-13 79.7 178 34.3
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 2.8e-13 79.7 158 39.9
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.8e-13 79.7 190 33.7
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 2.8e-13 79.7 205 31.7
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.2e-13 78.6 195 29.7
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 6.2e-13 78.6 201 30.8
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 8.1e-13 78.2 195 31.8
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 8.1e-13 78.2 180 31.7
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 2.4e-12 76.6 166 31.9
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 2.4e-12 76.6 200 31.0
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 3.1e-12 76.3 174 31.6
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 3.1e-12 76.3 188 31.4
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 3.1e-12 76.3 205 30.2
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 8.9e-12 74.7 171 35.7
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 1.5e-11 73.9 168 35.1
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 2.0e-11 73.6 162 34.0
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 3.4e-11 72.8 199 30.7
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 4.4e-11 72.4 160 33.8
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 4.4e-11 72.4 164 30.5
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 4.4e-11 72.4 167 29.3
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 4.4e-11 72.4 200 29.0
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 5.8e-11 72.0 195 30.3
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 5.8e-11 72.0 137 34.3
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 2.9e-10 69.7 191 31.4
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.9e-10 69.7 156 32.1
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 3.8e-10 69.3 98 39.8
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 4.9e-10 68.9 142 33.1
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 8.4e-10 68.2 128 33.6
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 3.2e-09 66.2 143 30.8
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 5.4e-09 65.5 142 31.0
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 7.1e-09 65.1 171 30.4
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 9.2e-09 64.7 182 29.1
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 9.2e-09 64.7 122 32.0
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 1.2e-08 64.3 153 32.0
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 1.2e-08 64.3 186 30.1
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.1e-08 63.5 76 46.1
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 2.1e-08 63.5 146 28.1
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 2.1e-08 63.5 145 33.8
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 2.7e-08 63.2 145 31.7
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 6.0e-08 62.0 109 39.4
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 6.0e-08 62.0 109 39.4
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 1.3e-07 60.8 99 38.4
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 2.3e-07 60.1 152 27.6
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 3.9e-07 59.3 94 29.8
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.1e-07 58.9 110 29.1
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 8.7e-07 58.2 93 36.6
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.1e-06 57.8 146 32.2
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.5e-06 57.4 99 36.4
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 7.3e-06 55.1 110 29.1
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 7.3e-06 55.1 131 32.8


User provided reference genes

Program Settings