Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.3e-88 329.7 168 100.0
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-44 183.7 97 97.9
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 4.1e-42 175.3 97 93.8
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 4.1e-42 175.3 97 93.8
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 4.1e-42 175.3 97 93.8
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 9.1e-42 174.1 97 92.8
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.0e-41 172.9 97 92.8
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 7.7e-41 171.0 101 91.1
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.7e-40 169.9 100 90.0
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.1e-39 167.2 100 88.0
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 7.2e-39 164.5 100 88.0
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 9.4e-39 164.1 97 88.7
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 2.7e-38 162.5 100 86.0
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 3.6e-38 162.2 100 87.0
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 3.6e-38 162.2 100 87.0
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.0e-36 156.4 98 85.7
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.7e-35 152.1 100 82.0
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.1e-34 150.6 100 81.0
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 4.5e-33 145.2 74 100.0
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.5e-33 145.2 100 76.0
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 4.5e-33 145.2 100 76.0
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.0e-32 144.1 100 74.0
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 2.2e-32 142.9 100 76.0
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.9e-32 142.5 100 74.0
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.8e-32 142.1 100 75.0
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 5.0e-32 141.7 96 76.0
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 6.5e-32 141.4 98 74.5
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 6.5e-32 141.4 100 73.0
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 8.5e-32 141.0 100 75.0
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 8.5e-32 141.0 99 73.7
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.1e-31 140.6 100 74.0
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.1e-31 140.6 99 74.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.1e-31 140.6 97 76.3
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.1e-31 140.6 100 76.0
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.1e-31 140.6 100 75.0
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.5e-31 140.2 100 74.0
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.9e-31 139.8 100 74.0
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 2.5e-31 139.4 100 74.0
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.5e-31 139.4 98 73.5
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 4.2e-31 138.7 99 73.7
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.5e-31 138.3 100 73.0
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 5.5e-31 138.3 100 74.0
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 7.2e-31 137.9 99 73.7
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 7.2e-31 137.9 101 72.3
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 7.2e-31 137.9 101 72.3
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 7.2e-31 137.9 101 72.3
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 7.2e-31 137.9 101 72.3
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 7.2e-31 137.9 100 72.0
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 9.4e-31 137.5 100 71.0
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 9.4e-31 137.5 100 74.0
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 9.4e-31 137.5 94 74.5
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 9.4e-31 137.5 99 71.7
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 9.4e-31 137.5 100 72.0
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-30 136.7 74 94.6
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.6e-30 136.7 96 72.9
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.1e-30 136.3 101 72.3
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 2.1e-30 136.3 92 76.1
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.1e-30 136.3 100 74.0
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 2.1e-30 136.3 98 71.4
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 2.7e-30 136.0 98 72.4
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 3.6e-30 135.6 94 75.5
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 3.6e-30 135.6 100 73.0
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 3.6e-30 135.6 100 72.0
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 3.6e-30 135.6 101 74.3
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.7e-30 135.2 94 76.6
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 4.7e-30 135.2 100 73.0
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 6.1e-30 134.8 97 73.2
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 6.1e-30 134.8 100 71.0
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 6.1e-30 134.8 100 71.0
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 8.0e-30 134.4 100 72.0
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 8.0e-30 134.4 98 71.4
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.0e-29 134.0 100 71.0
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.0e-29 134.0 100 71.0
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 1.0e-29 134.0 101 70.3
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.4e-29 133.7 100 71.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.4e-29 133.7 98 69.4
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.4e-29 133.7 98 71.4
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.4e-29 133.7 100 71.0
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.8e-29 133.3 100 70.0
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 2.3e-29 132.9 98 72.4
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.3e-29 132.9 100 71.0
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 3.0e-29 132.5 130 59.2
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 3.0e-29 132.5 100 70.0
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-29 132.5 101 69.3
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.0e-29 132.5 100 70.0
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.0e-29 132.5 100 70.0
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 3.0e-29 132.5 98 69.4
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 4.0e-29 132.1 101 69.3
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 6.8e-29 131.3 101 69.3
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 8.8e-29 131.0 101 68.3
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.2e-28 130.6 91 74.7
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.5e-28 130.2 90 74.4
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.0e-28 129.8 99 68.7
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.0e-28 129.8 100 68.0
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.4e-28 129.0 99 67.7
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.4e-28 129.0 99 67.7
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.4e-28 129.0 98 70.4
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.4e-28 129.0 100 66.0
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.7e-28 128.3 92 73.9
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.7e-28 128.3 99 65.7
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 5.7e-28 128.3 101 67.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 5.7e-28 128.3 100 66.0
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 9.8e-28 127.5 100 68.0
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.3e-27 127.1 100 68.0
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 2.2e-27 126.3 96 70.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 4.8e-27 125.2 99 67.7
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.8e-27 125.2 100 66.0
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 3.1e-26 122.5 99 65.7
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 4.1e-26 122.1 90 72.2
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.4e-26 121.7 132 55.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 5.4e-26 121.7 93 66.7
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 7.0e-26 121.3 101 69.3
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.0e-25 119.8 99 62.6
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 2.7e-25 119.4 128 55.5
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 7.7e-25 117.9 94 69.1
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.0e-24 117.5 99 63.6
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.9e-24 115.9 131 53.4
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.8e-24 115.5 70 82.9
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 8.5e-24 114.4 66 86.4
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.1e-23 114.0 74 77.0
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 9.4e-23 110.9 65 83.1
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.2e-22 110.5 77 76.6
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.6e-22 110.2 99 59.6
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 2.7e-22 109.4 66 81.8
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.4e-21 107.1 85 67.1
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.5e-20 103.6 92 62.0
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 5.7e-20 101.7 69 73.9
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 5.7e-20 101.7 69 73.9
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 6.3e-19 98.2 66 71.2
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 8.3e-19 97.8 98 61.2
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 2.4e-18 96.3 57 87.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 5.4e-18 95.1 69 69.6
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.6e-17 93.6 82 62.2
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 2.0e-17 93.2 104 51.9
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 3.5e-17 92.4 88 52.3
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 4.5e-17 92.0 90 55.6
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.7e-16 90.1 95 58.9
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 2.9e-16 89.4 51 84.3
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.6e-15 85.1 84 54.8
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.1e-14 83.2 63 71.4
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 8.9e-13 77.8 46 78.3
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 3.4e-12 75.9 65 61.5
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.3e-11 73.9 57 68.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 2.2e-11 73.2 94 50.0
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 2.2e-11 73.2 44 81.8
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 4.9e-11 72.0 44 75.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 6.4e-11 71.6 81 51.9
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.4e-10 69.7 66 50.0
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.2e-10 69.3 95 41.1
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.0e-10 68.2 55 58.2
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.6e-09 67.0 174 32.8
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.6e-09 67.0 84 46.4
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.8e-09 64.7 90 47.8
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.9e-08 62.4 83 45.8
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 6.6e-08 61.6 54 61.1
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 8.6e-08 61.2 37 81.1
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.9e-07 60.1 92 43.5
BolC3t14384H Brassica oleracea HOM05D004600 ORTHO05D005471 4.3e-07 58.9 75 53.3
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 2.1e-06 56.6 37 75.7


User provided reference genes

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