Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.1e-145 520.0 273 100.0
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 2.2e-125 452.6 273 90.5
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 2.6e-123 445.7 276 87.3
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 7.7e-123 444.1 273 88.6
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 7.2e-121 437.6 277 86.3
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 4.6e-120 434.9 274 87.2
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 1.2e-112 410.2 270 81.9
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 6.7e-103 377.9 274 76.3
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 4.7e-96 355.1 273 71.1
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 2.0e-94 349.7 273 69.6
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 2.2e-93 346.3 272 70.2
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 7.7e-91 337.8 268 69.0
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 3.1e-84 315.8 266 66.5
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 4.1e-84 315.5 218 79.4
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 4.7e-80 302.0 236 70.8
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 4.6e-67 258.8 270 55.9
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 2.6e-46 189.9 262 42.4
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 4.6e-43 179.1 267 40.4
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 7.3e-41 171.8 260 40.4
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 1.3e-40 171.0 264 42.8
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.3e-40 171.0 253 42.3
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 4.0e-39 166.0 261 42.9
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 1.2e-38 164.5 270 40.4
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 4.4e-38 162.5 261 38.3
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 5.8e-38 162.2 252 41.7
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 5.8e-38 162.2 247 42.5
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 5.8e-38 162.2 252 40.5
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 5.8e-38 162.2 242 43.0
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 9.9e-38 161.4 256 41.0
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.2e-37 160.2 247 42.5
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 2.2e-37 160.2 259 40.2
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 2.9e-37 159.8 247 42.1
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 4.9e-37 159.1 261 39.8
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.4e-36 157.5 258 38.8
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 9.3e-36 154.8 254 39.4
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 2.7e-35 153.3 219 41.1
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 7.8e-35 151.8 246 41.9
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 1.0e-34 151.4 257 39.3
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 1.7e-34 150.6 250 39.2
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 2.3e-34 150.2 257 39.3
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 3.0e-34 149.8 252 41.7
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 3.9e-34 149.4 256 37.9
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 5.1e-34 149.1 252 39.3
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 2.5e-33 146.7 247 39.7
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 7.3e-33 145.2 250 36.8
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 2.1e-32 143.7 208 43.3
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 6.2e-32 142.1 255 36.1
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 1.8e-31 140.6 256 36.7
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 3.1e-31 139.8 262 38.5
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 4.0e-31 139.4 247 38.1
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 5.3e-31 139.0 221 43.4
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 6.9e-31 138.7 261 38.7
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 6.9e-31 138.7 216 42.6
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 9.0e-31 138.3 186 46.8
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 1.2e-30 137.9 249 37.3
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.2e-30 137.9 247 37.7
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 2.0e-30 137.1 249 37.8
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 2.0e-30 137.1 334 33.8
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 2.6e-30 136.7 269 36.4
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 5.8e-30 135.6 272 36.8
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 9.9e-30 134.8 203 43.8
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 1.3e-29 134.4 248 37.1
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.7e-29 134.0 194 42.8
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 4.9e-29 132.5 245 35.5
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 6.4e-29 132.1 252 36.5
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 6.4e-29 132.1 280 36.8
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 8.4e-29 131.7 200 39.5
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 8.4e-29 131.7 276 36.2
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 7.1e-28 128.6 250 36.8
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 7.1e-28 128.6 253 36.8
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.2e-27 127.9 251 36.3
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.2e-27 127.9 298 33.2
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 2.1e-27 127.1 311 33.8
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.0e-26 124.8 210 38.6
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 1.3e-26 124.4 124 53.2
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.1e-25 121.3 195 40.0
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 4.3e-25 119.4 269 33.8
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 7.4e-25 118.6 137 44.5
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 9.6e-25 118.2 278 32.4
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 2.1e-24 117.1 128 47.7
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 8.1e-24 115.2 267 34.1
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 1.8e-23 114.0 252 36.5
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 2.4e-23 113.6 139 46.8
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 5.3e-23 112.5 151 40.4
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 2.6e-22 110.2 151 41.1
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 2.9e-21 106.7 267 31.8
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 8.4e-21 105.1 361 29.4
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 2.5e-20 103.6 248 33.5
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 3.5e-19 99.8 251 31.9
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 3.5e-19 99.8 126 45.2
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 4.6e-19 99.4 237 32.1
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.0e-18 98.2 203 34.0
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 5.7e-17 92.4 333 27.6
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 1.0e-13 81.6 168 36.3
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 8.4e-13 78.6 223 27.8
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 5.5e-12 75.9 123 35.8
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 5.5e-12 75.9 258 28.3
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 6.1e-11 72.4 153 32.7
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.8e-10 70.9 153 32.0
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 2.8e-08 63.5 160 31.9


User provided reference genes

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