Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-143 513.1 249 100.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 7.9e-135 483.8 249 95.6
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 7.5e-125 450.7 253 90.1
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.8e-124 448.7 252 86.1
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.7e-122 442.2 257 84.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.7e-121 439.5 257 84.8
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.6e-119 433.0 244 89.8
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 3.6e-119 431.8 256 87.1
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-117 424.9 252 87.3
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 4.4e-117 424.9 254 83.1
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 5.4e-115 417.9 253 81.4
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 5.4e-115 417.9 250 86.0
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.6e-114 416.4 257 82.1
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.3e-113 412.5 257 80.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 8.6e-113 410.6 251 83.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-110 403.3 259 80.3
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 2.0e-109 399.4 251 82.1
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 3.0e-102 375.6 255 72.5
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 8.3e-100 367.5 250 76.0
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.5e-85 320.1 251 60.6
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.6e-85 319.3 258 61.2
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.3e-84 317.0 253 62.5
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.3e-84 317.0 257 60.7
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.7e-84 316.6 257 61.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 3.7e-84 315.5 255 60.8
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.4e-84 314.7 257 60.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.4e-83 313.5 257 59.1
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.9e-83 313.2 252 59.9
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.9e-83 313.2 257 60.3
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.9e-83 313.2 259 60.2
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.4e-83 312.8 252 61.9
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.2e-83 312.4 254 61.4
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.2e-83 312.4 252 61.9
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 5.4e-83 311.6 260 58.8
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 4.6e-82 308.5 258 59.3
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.8e-82 307.8 249 61.0
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.0e-81 307.4 257 60.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.0e-81 307.4 257 60.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.7e-81 306.6 251 61.4
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.7e-81 306.6 189 75.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.3e-81 306.2 246 62.6
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 5.1e-81 305.1 253 61.3
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.9e-80 303.1 256 60.5
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.5e-80 302.8 245 61.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.3e-80 302.4 243 61.3
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.3e-80 302.0 258 59.7
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 5.6e-80 301.6 251 60.2
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.6e-79 300.1 265 57.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.6e-79 300.1 253 58.5
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.1e-79 299.7 237 62.4
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.8e-79 299.3 261 58.2
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 3.6e-79 298.9 254 57.1
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.6e-79 298.9 249 58.6
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 4.7e-79 298.5 257 58.0
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 6.2e-79 298.1 259 57.9
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 6.2e-79 298.1 260 57.3
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 8.1e-79 297.7 256 58.6
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.1e-78 297.4 180 75.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.1e-78 297.4 249 59.4
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.1e-78 297.4 260 57.3
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.4e-78 296.2 257 59.1
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.1e-78 295.8 189 72.5
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 5.2e-78 295.0 262 57.3
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 6.8e-78 294.7 249 59.4
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.9e-78 294.3 246 58.9
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.2e-77 293.9 256 57.0
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.5e-77 293.5 261 55.9
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 2.0e-77 293.1 261 57.9
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.0e-77 293.1 255 57.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.8e-77 291.6 249 58.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 7.6e-77 291.2 245 59.6
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 9.9e-77 290.8 247 58.7
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-76 290.4 260 56.5
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.3e-76 290.4 249 57.4
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.7e-76 290.0 261 54.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.2e-76 289.7 256 56.2
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 6.4e-76 288.1 252 55.6
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 8.4e-76 287.7 265 55.8
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.4e-76 287.7 260 55.8
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 8.4e-76 287.7 261 56.3
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-75 287.3 257 56.0
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.4e-75 287.0 256 57.4
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 3.2e-75 285.8 251 57.8
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 7.1e-75 284.6 256 56.2
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 9.2e-75 284.3 262 55.3
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 9.2e-75 284.3 289 52.9
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.2e-74 283.9 256 56.2
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.2e-74 283.9 257 56.0
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.1e-74 283.1 259 52.9
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.6e-74 282.0 261 53.3
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 4.6e-74 282.0 258 55.8
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.0e-74 281.6 212 61.8
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.0e-73 280.8 260 54.2
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 6.6e-73 278.1 258 53.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 6.6e-73 278.1 260 54.6
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.5e-72 276.9 176 70.5
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 2.5e-72 276.2 250 54.8
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 5.6e-72 275.0 187 63.6
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 5.6e-72 275.0 260 55.0
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 5.6e-72 275.0 174 73.6
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 7.3e-72 274.6 262 55.0
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 9.6e-72 274.2 204 61.8
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 9.6e-72 274.2 232 59.1
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 9.6e-72 274.2 232 59.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.6e-71 273.5 248 54.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 3.6e-71 272.3 184 64.1
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 6.2e-71 271.6 204 61.8
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 8.1e-71 271.2 174 67.8
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 5.2e-70 268.5 170 70.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 5.2e-70 268.5 170 70.0
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 4.4e-69 265.4 248 54.8
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.7e-68 263.5 250 52.0
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.8e-68 262.3 181 65.7
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.9e-68 261.9 251 55.4
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.2e-66 257.3 170 68.8
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.6e-66 256.9 212 61.3
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 2.7e-66 256.1 174 64.9
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.7e-65 253.4 170 65.9
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 2.3e-65 253.1 213 62.4
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 5.1e-65 251.9 216 62.5
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 6.6e-65 251.5 248 50.4
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.1e-64 250.8 176 60.8
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.6e-63 246.9 254 52.4
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.6e-63 246.9 150 72.7
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 6.9e-62 241.5 231 55.4
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 7.6e-61 238.0 147 72.8
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.3e-60 237.3 260 49.2
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.9e-59 233.4 213 55.9
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 2.1e-58 229.9 138 74.6
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 7.9e-58 228.0 218 53.7
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.3e-54 215.3 250 46.8
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.7e-52 210.3 257 45.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.7e-52 210.3 152 64.5
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 4.9e-52 208.8 171 56.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.4e-51 206.5 255 44.7
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 9.3e-51 204.5 165 58.2
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 4.6e-50 202.2 165 57.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.0e-49 199.5 174 53.4
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.0e-49 199.5 111 80.2
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 3.3e-48 196.1 169 55.0
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.1e-47 193.4 138 61.6
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.2e-47 191.8 257 44.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.1e-46 189.5 167 53.9
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.5e-45 187.2 257 43.6
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 3.0e-33 146.4 138 52.9
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.7e-31 139.4 91 70.3
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.1e-30 136.3 84 72.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.1e-30 134.8 209 38.8
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.5e-29 134.0 105 63.8
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.3e-28 131.0 124 54.8
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.5e-24 117.5 213 30.5
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-24 117.1 71 76.1
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.6e-24 116.7 63 82.5
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.7e-24 115.5 85 54.1
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 1.5e-21 107.5 141 38.3
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 5.0e-20 102.4 77 62.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.1e-18 97.1 65 64.6
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-16 90.9 67 56.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-12 77.0 86 41.9
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 6.5e-12 75.5 39 79.5
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.5e-11 72.4 52 57.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 3.6e-10 69.7 51 60.8
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-08 63.9 51 52.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.0e-08 63.9 52 51.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.4e-06 57.8 98 40.8


User provided reference genes

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