Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 2.9e-113 412.1 244 100.0
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 3.9e-110 401.7 244 97.1
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 3.9e-110 401.7 244 97.5
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.5e-109 399.8 244 97.1
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 4.3e-109 398.3 244 96.7
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.6e-108 395.2 244 95.1
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 4.0e-107 391.7 244 95.1
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 1.5e-106 389.8 244 91.8
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 3.4e-106 388.7 244 94.3
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 7.6e-106 387.5 244 95.5
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 2.2e-105 386.0 244 93.9
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 1.9e-104 382.9 244 93.0
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 6.0e-103 377.9 244 80.7
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 2.3e-86 322.8 244 68.4
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.8e-78 296.6 244 66.0
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 8.8e-78 294.3 244 66.4
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.8e-75 286.6 243 63.4
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.8e-75 286.6 246 59.8
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.4e-75 286.2 243 60.1
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 3.1e-75 285.8 241 57.7
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 6.9e-75 284.6 243 62.1
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 5.9e-74 281.6 243 59.7
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 5.9e-74 281.6 243 58.4
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 1.0e-73 280.8 244 59.0
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 1.9e-72 276.6 238 64.3
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 3.2e-72 275.8 243 58.8
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 4.2e-72 275.4 244 63.1
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 7.2e-72 274.6 243 65.0
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.2e-71 273.9 244 56.1
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.2e-71 273.9 243 63.0
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 2.1e-71 273.1 244 60.7
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.1e-71 273.1 244 63.1
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 3.6e-71 272.3 238 66.4
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 7.9e-71 271.2 239 65.7
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.0e-70 270.8 244 59.8
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.0e-70 270.8 243 56.0
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.4e-70 270.4 246 59.8
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.4e-70 270.4 244 61.5
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.4e-70 270.4 238 66.0
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.8e-70 270.0 241 57.3
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 5.1e-70 268.5 242 63.6
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 5.1e-70 268.5 238 65.1
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 6.7e-70 268.1 245 56.7
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 8.8e-70 267.7 240 55.4
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 8.8e-70 267.7 242 60.7
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 2.0e-69 266.5 243 56.0
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.6e-69 266.2 244 60.7
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 2.6e-69 266.2 243 56.0
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 3.3e-69 265.8 247 61.1
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 4.4e-69 265.4 262 59.5
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 7.4e-69 264.6 246 56.1
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 9.7e-69 264.2 243 57.6
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.3e-68 263.8 249 64.7
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.3e-68 263.8 240 54.6
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.3e-68 263.8 244 55.7
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 1.7e-68 263.5 244 62.3
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 1.7e-68 263.5 243 55.1
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 3.7e-68 262.3 243 61.7
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 3.7e-68 262.3 240 55.8
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 4.8e-68 261.9 246 62.2
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 6.3e-68 261.5 242 52.9
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 8.2e-68 261.2 244 65.6
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.1e-67 260.8 243 54.7
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.1e-67 260.8 254 66.9
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 3.1e-67 259.2 239 54.4
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 3.1e-67 259.2 243 54.3
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 5.3e-67 258.5 254 57.1
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 5.3e-67 258.5 242 60.7
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 2.0e-66 256.5 243 62.1
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 2.6e-66 256.1 240 52.9
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 2.6e-66 256.1 243 54.7
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.0e-65 254.2 240 57.9
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 1.3e-65 253.8 241 57.7
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.3e-65 253.8 240 52.9
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 5.0e-65 251.9 240 57.9
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.1e-64 250.8 239 63.6
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.4e-64 250.4 241 53.5
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 9.4e-64 247.7 241 61.8
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 3.6e-63 245.7 251 59.4
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 3.0e-62 242.7 242 57.9
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 3.9e-62 242.3 240 54.6
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.5e-61 240.4 236 54.2
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.5e-61 240.4 255 62.0
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 6.3e-60 235.0 242 53.7
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 6.3e-60 235.0 242 53.7
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.8e-59 233.4 356 44.1
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 2.6e-58 229.6 243 54.7
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 5.9e-58 228.4 243 54.7
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 7.7e-58 228.0 243 55.1
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 7.7e-58 228.0 243 53.1
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 2.2e-57 226.5 222 57.2
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.2e-57 226.5 245 49.0
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.1e-56 224.2 243 48.6
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.5e-56 223.0 167 65.3
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 3.2e-56 222.6 252 56.3
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.6e-55 220.3 244 47.1
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.4e-54 217.2 269 52.8
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 5.2e-54 215.3 167 63.5
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 5.2e-54 215.3 167 63.5
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 2.2e-52 209.9 188 62.8
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.8e-52 209.5 243 49.0
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.7e-52 209.1 171 62.0
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 8.2e-52 208.0 233 53.6
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.6e-50 203.8 234 61.5
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 2.0e-50 203.4 239 49.4
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 1.0e-49 201.1 237 50.6
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.2e-49 199.9 197 51.3
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 4.2e-48 195.7 242 45.9
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 3.8e-41 172.6 89 97.8
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 5.0e-41 172.2 153 66.0
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 4.0e-38 162.5 240 37.9
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.4e-35 154.1 242 39.7
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.3e-33 147.5 242 45.9
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-33 147.1 86 89.5
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 3.8e-33 146.0 237 33.8
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 4.7e-31 139.0 134 57.5
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 6.8e-30 135.2 238 31.9
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 3.4e-29 132.9 218 48.6
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.4e-27 127.5 241 33.2
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.3e-25 120.9 134 49.3
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 2.1e-23 113.6 245 30.2
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 4.4e-21 105.9 120 46.7
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 3.2e-19 99.8 129 42.6
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 3.0e-17 93.2 168 33.9
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 3.6e-15 86.3 207 31.4
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.8e-14 84.0 165 33.3
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 9.9e-13 78.2 122 36.9
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 9.9e-13 78.2 122 36.9
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 2.2e-12 77.0 122 36.1
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 2.2e-12 77.0 122 36.1
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.4e-11 74.3 122 35.2
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.4e-11 73.6 125 34.4
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 5.4e-11 72.4 57 63.2
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 9.2e-11 71.6 69 50.7
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 2.1e-10 70.5 52 67.3
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.7e-10 70.1 36 88.9
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.7e-10 70.1 36 88.9
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.7e-10 70.1 36 88.9
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.7e-10 70.1 36 88.9
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.7e-10 70.1 36 88.9
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 7.8e-10 68.6 36 86.1
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 1.0e-09 68.2 281 28.5
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 6.6e-09 65.5 169 30.2
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 2.8e-07 60.1 218 30.3
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 3.6e-07 59.7 35 74.3
HanXRQChr09g0239031 Helianthus annuus HOM05D005295 ORTHO05D005962 1.1e-06 58.2 74 43.2
HanXRQChr11g0352521 Helianthus annuus HOM05D005295 ORTHO05D005962 1.1e-06 58.2 74 43.2
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.1e-06 58.2 70 47.1


User provided reference genes

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