Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 2.1e-244 848.6 429 100.0
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 2.7e-215 751.9 533 77.5
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 5.3e-211 737.6 534 75.8
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 2.6e-210 735.3 534 75.5
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 3.4e-210 734.9 534 76.0
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 2.2e-209 732.3 534 75.7
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 2.4e-208 728.8 534 75.5
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 2.5e-205 718.8 534 74.5
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 3.3e-205 718.4 528 75.0
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 1.3e-204 716.5 534 74.5
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 1.1e-203 713.4 538 72.9
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 4.5e-202 708.0 528 73.7
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 5.6e-197 691.0 534 72.1
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 5.5e-168 594.7 529 61.2
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 1.4e-166 590.1 501 64.9
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 1.4e-166 590.1 531 61.0
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 3.3e-165 585.5 538 60.2
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 5.7e-165 584.7 538 59.5
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 9.7e-165 583.9 537 59.6
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 1.7e-164 583.2 537 60.3
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 3.7e-164 582.0 532 61.3
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 4.8e-164 581.6 535 60.7
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 6.3e-164 581.3 532 59.6
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 8.2e-164 580.9 533 60.8
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.1e-163 580.5 529 59.7
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 1.4e-163 580.1 532 59.4
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 1.4e-163 580.1 532 59.0
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 1.4e-163 580.1 536 60.1
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 7.0e-163 577.8 532 59.6
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 9.1e-163 577.4 537 60.5
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 2.0e-162 576.2 525 60.2
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.6e-162 575.9 536 59.5
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 3.5e-162 575.5 532 59.0
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 5.9e-162 574.7 536 59.3
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 1.0e-161 573.9 531 60.3
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 1.3e-161 573.5 534 59.0
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 5.0e-161 571.6 519 60.3
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 5.5e-160 568.2 533 59.1
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 9.4e-160 567.4 499 60.9
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 1.2e-159 567.0 519 60.5
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 1.2e-159 567.0 519 60.3
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 1.8e-158 563.1 519 60.1
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 2.3e-158 562.8 538 58.6
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 2.3e-158 562.8 533 58.9
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 4.0e-158 562.0 526 58.9
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 1.5e-157 560.1 519 59.5
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 1.5e-157 560.1 525 59.2
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 2.0e-157 559.7 539 58.3
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 2.0e-157 559.7 539 58.3
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 7.5e-157 557.8 519 58.8
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 7.5e-157 557.8 519 59.0
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.7e-156 555.4 515 59.4
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 8.2e-156 554.3 525 58.7
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 1.8e-155 553.1 521 59.9
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 5.3e-155 551.6 532 56.8
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 7.0e-155 551.2 535 58.1
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 9.1e-155 550.8 534 57.1
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 1.2e-154 550.4 524 58.0
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 3.5e-154 548.9 526 58.4
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 5.9e-154 548.1 521 58.0
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 7.7e-154 547.7 529 57.1
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 1.3e-153 547.0 535 57.6
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 1.7e-153 546.6 537 57.0
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 2.2e-153 546.2 537 57.2
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 2.2e-153 546.2 529 56.9
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 2.2e-153 546.2 530 57.5
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 3.8e-153 545.4 538 56.1
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 6.5e-153 544.7 509 59.1
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 8.5e-153 544.3 547 56.1
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 8.5e-153 544.3 533 56.8
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 1.5e-152 543.5 530 56.2
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 1.9e-152 543.1 532 57.7
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 3.2e-152 542.3 535 56.8
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 4.2e-152 542.0 537 57.2
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 4.2e-152 542.0 531 57.3
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 9.4e-152 540.8 534 56.6
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 9.4e-152 540.8 518 58.1
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 9.4e-152 540.8 576 53.8
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 8.0e-151 537.7 564 54.4
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 4.0e-150 535.4 533 56.1
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 4.0e-150 535.4 532 57.0
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 1.3e-145 520.4 530 55.7
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 2.8e-143 512.7 520 54.2
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 2.8e-143 512.7 518 53.1
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 1.3e-140 503.8 518 52.3
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 1.6e-138 496.9 536 53.0
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 7.8e-138 494.6 534 52.8
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 5.0e-137 491.9 517 51.3
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 4.3e-136 488.8 521 55.7
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 2.0e-130 469.9 445 58.9
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 2.7e-130 469.5 540 48.1
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 1.2e-127 460.7 413 59.6
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 5.2e-126 455.3 530 52.1
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 9.2e-123 444.5 533 45.8
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 1.7e-121 440.3 530 46.8
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 5.6e-120 435.3 516 51.4
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 3.1e-118 429.5 505 47.7
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 7.5e-117 424.9 452 53.5
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 1.4e-99 367.5 387 49.1
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 8.4e-84 315.1 505 37.8
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 1.2e-82 311.2 500 36.6
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 9.6e-80 301.6 516 36.2
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 2.1e-79 300.4 514 36.6
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.5e-69 266.2 432 41.2
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 3.8e-60 236.5 211 60.7
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.3e-55 221.5 416 41.1
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 8.5e-52 208.8 131 79.4
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 4.1e-38 163.3 243 46.5
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 7.0e-38 162.5 96 80.2
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 7.5e-32 142.5 286 38.1
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.4e-30 138.3 582 22.3
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 3.3e-27 127.1 83 68.7
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 5.5e-27 126.3 97 64.9
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 2.4e-14 84.3 85 57.6
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 6.0e-13 79.7 39 100.0
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 4.3e-11 73.6 95 43.2
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 2.3e-09 67.8 100 41.0
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 1.5e-08 65.1 36 83.3


User provided reference genes

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