Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 4.5e-311 1070.5 552 100.0
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 4.4e-295 1017.3 548 95.6
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 4.4e-295 1017.3 548 95.6
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 2.4e-293 1011.5 552 94.9
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 7.1e-293 1010.0 552 95.5
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 2.7e-292 1008.1 552 94.6
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 1.5e-290 1002.3 552 94.9
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 6.2e-289 996.9 552 94.2
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 1.3e-286 989.2 552 93.5
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 6.4e-286 986.9 552 93.3
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 1.1e-285 986.1 553 93.5
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 8.7e-275 949.9 574 87.8
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 7.3e-274 946.8 560 90.2
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 6.0e-268 927.2 554 86.1
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 6.2e-265 917.1 547 89.0
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 7.1e-261 903.7 541 88.2
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 6.5e-254 880.6 544 86.9
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 5.1e-251 870.9 552 80.4
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 1.9e-250 869.0 552 80.1
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 5.9e-247 857.4 552 78.8
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 6.5e-246 854.0 552 79.0
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.1e-245 853.2 552 78.4
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.1e-245 853.2 543 80.5
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 1.9e-245 852.4 552 78.1
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 2.5e-245 852.0 552 79.5
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 7.2e-245 850.5 552 78.6
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 1.6e-244 849.4 552 79.7
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 6.7e-243 844.0 552 78.8
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 8.8e-243 843.6 552 77.7
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 1.5e-242 842.8 555 78.2
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 2.2e-241 839.0 548 78.6
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 3.7e-241 838.2 554 78.2
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 6.3e-241 837.4 542 78.0
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 6.3e-241 837.4 553 78.3
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 6.3e-241 837.4 551 78.4
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 1.8e-240 835.9 553 77.8
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 4.1e-240 834.7 547 77.9
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 9.1e-240 833.6 548 77.6
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 1.2e-239 833.2 546 78.2
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 1.5e-239 832.8 552 78.1
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 2.0e-239 832.4 552 78.1
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 3.4e-239 831.6 554 77.3
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 3.4e-239 831.6 551 77.1
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 4.5e-239 831.2 554 77.1
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.3e-238 829.7 554 76.9
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 1.3e-238 829.7 548 78.6
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 2.2e-238 828.9 554 77.6
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.9e-238 828.6 554 76.9
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 3.8e-238 828.2 552 76.6
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 8.5e-238 827.0 552 76.6
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.9e-237 825.9 554 76.5
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 4.2e-237 824.7 552 76.4
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 5.5e-237 824.3 552 77.5
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 9.4e-237 823.5 548 77.2
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 1.2e-236 823.2 542 76.4
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 1.6e-236 822.8 542 77.1
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 3.6e-236 821.6 542 77.3
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 4.7e-236 821.2 550 77.3
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 6.1e-236 820.8 542 76.8
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 1.4e-235 819.7 554 77.1
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 2.3e-235 818.9 542 77.1
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 2.3e-235 818.9 554 76.5
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 5.1e-235 817.8 552 74.8
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 6.7e-235 817.4 548 77.4
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 1.1e-234 816.6 553 76.3
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 2.0e-234 815.8 549 76.9
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 7.4e-234 813.9 542 76.2
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 3.7e-233 811.6 541 76.2
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 7.0e-232 807.4 601 71.2
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 1.2e-231 806.6 550 76.0
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 5.9e-231 804.3 558 74.2
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 1.7e-230 802.7 543 75.1
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 3.8e-230 801.6 548 74.3
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.5e-229 799.7 548 75.9
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 5.5e-229 797.7 552 74.1
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 7.2e-229 797.3 542 75.8
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 1.2e-228 796.6 556 74.5
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 2.7e-228 795.4 522 77.4
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 3.6e-228 795.0 545 74.1
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 6.1e-228 794.3 552 72.6
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 8.0e-228 793.9 541 75.4
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 1.0e-227 793.5 555 73.5
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 1.4e-227 793.1 595 70.3
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 2.3e-227 792.3 542 74.9
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 3.0e-227 792.0 564 73.2
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 8.8e-227 790.4 546 74.5
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 2.6e-226 788.9 543 74.2
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 1.7e-225 786.2 553 73.4
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 2.8e-225 785.4 548 73.4
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 4.8e-225 784.6 553 74.0
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 6.3e-225 784.3 552 74.8
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 6.3e-225 784.3 555 72.8
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 1.1e-224 783.5 524 75.8
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 2.4e-224 782.3 548 71.9
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 1.0e-222 776.9 526 73.0
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 8.5e-222 773.9 552 73.0
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 1.9e-221 772.7 554 73.5
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 2.5e-221 772.3 542 72.7
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 3.4e-218 761.9 547 71.1
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 3.7e-217 758.4 549 71.4
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 8.3e-217 757.3 552 72.6
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 9.1e-216 753.8 658 62.6
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 7.7e-207 724.2 547 68.0
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 8.6e-206 720.7 555 70.5
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 4.3e-205 718.4 663 58.8
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 8.0e-204 714.1 548 68.2
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 6.2e-196 688.0 548 67.3
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 1.7e-193 679.9 558 62.9
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.0e-191 672.9 554 65.9
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 7.8e-191 671.0 657 58.8
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 2.0e-186 656.4 541 63.2
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 5.8e-186 654.8 549 61.4
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 8.3e-185 651.0 541 63.2
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 1.1e-173 614.0 382 80.9
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 4.8e-164 582.0 524 57.6
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 8.4e-161 571.2 369 79.4
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 7.9e-159 564.7 548 54.6
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 1.0e-150 537.7 612 48.5
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 2.8e-148 529.6 381 74.0
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 7.6e-146 521.5 355 72.7
Lj6A103G48 Lonicera japonica HOM05D003653 ORTHO05D004249 2.1e-127 460.3 367 66.5
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 6.1e-127 458.8 304 74.7
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 7.7e-122 441.8 299 73.9
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 4.2e-120 436.0 396 62.4
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 4.0e-102 376.3 693 35.8
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 6.8e-102 375.6 466 49.8
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 1.0e-97 361.7 283 68.2
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 1.9e-96 357.5 214 82.2
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 9.2e-91 338.6 253 68.0
Solyc07g017530.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 8.6e-81 305.4 222 71.6
CDE09G1393 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 3.3e-80 303.5 228 70.2
BraA02t06914Z Brassica rapa HOM05D003653 ORTHO05D004249 1.5e-72 278.1 150 95.3
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 4.9e-68 263.1 603 32.7
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 3.2e-67 260.4 184 70.1
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.9e-60 237.3 216 62.5
ClCG08G005090 Citrullus lanatus HOM05D003653 ORTHO05D004249 4.9e-60 236.5 172 72.7
Nitab4.5_0000055g0040 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.4e-59 235.0 197 68.5
SEGI_20709 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 3.2e-59 233.8 200 62.0
RcHm_v2.0_Chr2g0096141 Rosa chinensis HOM05D003653 ORTHO05D004249 4.1e-59 233.4 146 79.5
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 4.3e-56 223.4 158 74.7
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 8.1e-55 219.2 152 74.3
QL02p096242 Quercus lobata HOM05D003653 ORTHO05D004249 1.9e-48 198.0 175 61.7
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 1.8e-46 191.4 122 77.9
SEGI_20750 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.8e-33 148.3 101 71.3
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 2.5e-32 144.4 500 24.6
CiPaw.07G188100 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.6e-31 141.7 112 67.9
TAR383G0271 Trochodendron aralioides HOM05D003653 ORTHO05D004249 5.5e-27 126.7 86 75.6
ECA232G0158 Erigeron canadensis HOM05D003653 ORTHO05D004249 5.7e-24 116.7 94 59.6
Gohir.D08G133700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 5.7e-24 116.7 107 58.9
Gorai.004G136800 Gossypium raimondii HOM05D003653 ORTHO05D004249 4.8e-23 113.6 107 57.9
Sopen07g006330 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-22 111.7 90 66.7
CSS0010583 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 7.6e-21 106.3 66 77.3
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.7e-20 105.1 81 65.4
CSS0016569 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.1e-19 102.4 91 61.5
CSS0022673 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 2.1e-18 98.2 49 91.8
SEGI_27322 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 6.1e-18 96.7 63 71.4
Medtr8g018610 Medicago truncatula HOM05D003653 ORTHO05D004249 1.8e-14 85.1 51 78.4
CSS0016294 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.0e-12 79.3 89 50.6
MCO01G230 Micromonas commoda HOM05D003653 ORTHO05D004249 1.2e-10 72.4 177 26.6
MBI08_g05369_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 1.8e-09 68.6 55 63.6
CSS0016412 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.8e-06 58.5 34 70.6
Haze_16165 Corylus avellana HOM05D003653 ORTHO05D004249 4.1e-06 57.4 102 41.2


User provided reference genes

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