Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 2.9e-199 698.4 351 100.0
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 5.3e-185 651.0 353 92.4
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 1.2e-184 649.8 356 91.0
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.5e-184 649.4 356 91.0
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 5.9e-184 647.5 356 90.7
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 3.0e-180 635.2 368 89.4
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 2.5e-179 632.1 356 90.7
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.4e-177 626.3 357 89.1
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 7.7e-176 620.5 358 88.8
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.3e-175 619.8 378 86.5
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 2.3e-172 609.0 356 87.9
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 6.1e-165 584.3 380 80.5
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.5e-155 553.1 353 80.5
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.3e-146 523.5 342 78.9
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.8e-145 519.6 342 78.1
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 3.5e-144 515.4 343 77.8
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 4.5e-144 515.0 342 76.3
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 7.7e-144 514.2 341 75.7
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 7.7e-144 514.2 329 79.3
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.3e-143 513.5 353 75.6
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 4.2e-142 508.4 355 73.2
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 7.2e-142 507.7 327 78.6
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.2e-141 506.9 349 74.5
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 2.8e-141 505.8 350 74.3
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 3.6e-141 505.4 326 77.9
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 6.1e-141 504.6 341 73.9
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 6.1e-141 504.6 324 79.6
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 1.4e-140 503.4 305 79.3
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 5.2e-140 501.5 352 73.6
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.2e-139 500.4 288 89.2
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 1.2e-139 500.4 350 72.0
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.5e-139 500.0 341 74.5
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.0e-139 499.6 349 71.3
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 2.0e-139 499.6 356 73.3
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 4.4e-139 498.4 321 77.9
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 4.4e-139 498.4 366 73.0
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 5.7e-139 498.0 325 77.2
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 5.7e-139 498.0 320 76.2
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.7e-138 496.5 343 74.6
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 2.2e-138 496.1 346 74.0
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 4.9e-138 495.0 350 72.0
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 8.3e-138 494.2 351 72.6
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 8.3e-138 494.2 320 75.6
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 5.4e-137 491.5 333 76.3
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 5.4e-137 491.5 312 78.2
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 5.4e-137 491.5 326 74.5
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 7.0e-137 491.1 320 74.7
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 7.0e-137 491.1 320 75.3
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 5.9e-136 488.0 378 67.7
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 7.8e-136 487.6 303 77.6
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.0e-135 487.3 303 78.9
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 1.0e-135 487.3 288 82.6
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.7e-135 486.5 355 71.0
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.3e-135 486.1 303 78.2
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 5.0e-135 485.0 311 76.2
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 6.6e-135 484.6 309 78.0
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.1e-134 483.8 324 72.5
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 2.5e-134 482.6 317 74.8
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 2.5e-134 482.6 311 75.9
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.3e-134 481.9 325 76.0
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 5.6e-134 481.5 325 74.2
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 7.3e-134 481.1 343 71.4
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 9.5e-134 480.7 300 77.7
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.2e-133 480.3 316 75.9
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.2e-133 480.3 330 73.9
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 6.1e-133 478.0 308 75.3
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 8.0e-133 477.6 322 75.2
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 3.1e-132 475.7 372 67.5
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.5e-131 473.4 374 65.2
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 5.8e-131 471.5 308 76.3
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.3e-130 470.3 330 70.9
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 2.9e-130 469.2 344 68.3
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.9e-129 466.5 339 70.2
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.9e-129 466.5 311 73.3
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 4.1e-129 465.3 341 69.5
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 5.4e-129 464.9 307 73.3
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.6e-128 461.8 311 73.3
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 6.0e-128 461.5 330 72.1
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 4.3e-126 455.3 308 75.0
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.6e-125 453.4 356 65.4
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.6e-125 453.4 356 65.4
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 3.6e-125 452.2 291 78.7
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 5.4e-121 438.3 378 63.0
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.6e-120 436.8 275 79.6
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 8.6e-119 431.0 342 67.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 6.2e-117 424.9 273 77.7
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.3e-116 422.9 300 72.3
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 8.6e-111 404.4 278 69.8
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 4.7e-109 398.7 357 58.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 1.8e-108 396.7 270 73.7
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 2.7e-104 382.9 334 59.3
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.1e-103 378.6 236 75.0
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.5e-102 377.1 270 71.1
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 4.3e-102 375.6 268 70.9
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 8.1e-101 371.3 304 61.2
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.0e-95 354.4 290 67.2
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.5e-94 349.7 239 73.6
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.8e-93 346.3 201 83.1
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 4.8e-93 345.5 239 71.1
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.1e-92 344.4 350 55.7
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 2.4e-92 343.2 271 66.1
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.1e-92 342.8 314 55.4
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.5e-91 340.5 205 80.0
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 2.4e-89 333.2 349 55.9
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 6.9e-84 315.1 200 74.0
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.9e-82 309.7 311 54.7
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 4.6e-80 302.4 194 79.9
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 3.3e-78 296.2 351 47.9
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 2.5e-70 270.0 219 62.6
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.3e-63 246.9 148 78.4
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 1.3e-58 231.1 131 84.0
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.7e-58 230.7 192 62.0
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.1e-57 228.0 286 45.1
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 1.8e-55 220.7 130 87.7
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 1.8e-55 220.7 130 87.7
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 1.7e-53 214.2 247 50.2
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 1.8e-52 210.7 126 85.7
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.9e-51 205.7 119 84.0
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 8.5e-50 201.8 153 67.3
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 2.3e-47 193.7 120 75.0
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 1.1e-46 191.4 320 36.6
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.5e-46 191.0 136 70.6
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 4.4e-46 189.5 120 77.5
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.2e-45 187.2 198 53.5
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.8e-44 184.1 153 71.2
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.0e-39 166.8 162 58.6
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 5.4e-36 156.0 86 87.2
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 1.2e-22 111.7 116 52.6
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.9e-21 107.1 113 52.2
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.4e-20 104.8 95 63.2
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 9.5e-17 92.0 74 62.2
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 2.8e-16 90.5 58 75.9
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 2.6e-14 84.0 79 55.7
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 7.5e-14 82.4 110 42.7
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 3.7e-13 80.1 140 39.3
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 7.0e-12 75.9 82 51.2
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 4.6e-11 73.2 66 62.1
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 1.5e-09 68.2 35 85.7
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 5.6e-09 66.2 158 34.2
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 1.2e-08 65.1 92 44.6
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 6.2e-08 62.8 72 56.9
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 6.2e-08 62.8 79 54.4


User provided reference genes

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