Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.5e-73 279.6 162 100.0
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 7.4e-65 250.8 163 92.0
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 1.4e-63 246.5 163 90.8
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.3e-61 240.0 162 89.5
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.3e-61 240.0 162 89.5
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.3e-61 240.0 162 88.9
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 2.9e-61 238.8 163 88.3
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 1.9e-60 236.1 160 89.4
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 1.9e-60 236.1 160 89.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 1.9e-60 236.1 162 87.7
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 9.3e-60 233.8 163 86.5
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 1.1e-57 226.9 162 84.6
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 4.3e-57 224.9 162 84.6
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 1.6e-56 223.0 165 83.6
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 1.8e-55 219.5 162 83.3
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 1.7e-53 213.0 155 85.2
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 3.2e-52 208.8 163 83.4
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.6e-51 206.5 160 81.9
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.6e-51 206.5 160 81.9
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.6e-51 206.5 160 81.9
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 2.0e-46 189.5 162 71.6
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.0e-42 177.2 155 75.5
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.4e-34 150.2 140 68.6
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.3e-34 149.4 140 67.9
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 1.1e-33 147.1 156 66.7
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.1e-33 147.1 142 66.2
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.5e-33 146.7 140 67.9
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 1.3e-32 143.7 156 66.7
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 3.7e-32 142.1 133 69.2
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 6.3e-32 141.4 165 59.4
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 6.3e-32 141.4 151 62.3
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-31 140.2 136 67.6
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.8e-31 139.8 162 59.9
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.8e-31 139.8 136 67.6
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 1.8e-31 139.8 163 62.6
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 1.8e-31 139.8 163 62.6
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 1.8e-31 139.8 131 65.6
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 2.4e-31 139.4 156 64.7
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.4e-31 139.4 150 64.0
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 4.1e-31 138.7 137 67.2
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 9.1e-31 137.5 133 65.4
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 1.2e-30 137.1 166 59.6
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.2e-30 137.1 140 65.7
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.2e-30 137.1 168 59.5
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.6e-30 136.7 159 59.7
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.0e-30 136.3 136 66.2
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 5.9e-30 134.8 140 65.0
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 7.7e-30 134.4 155 61.9
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 7.7e-30 134.4 138 65.9
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.3e-29 133.7 157 63.1
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.9e-29 132.5 143 63.6
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 2.9e-29 132.5 147 62.6
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 3.8e-29 132.1 157 61.8
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 3.8e-29 132.1 142 63.4
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 6.5e-29 131.3 144 65.3
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 8.5e-29 131.0 143 62.9
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 8.5e-29 131.0 157 58.0
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.1e-28 130.6 143 60.1
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.1e-28 130.6 109 73.4
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 1.5e-28 130.2 132 63.6
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 1.5e-28 130.2 166 59.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 2.5e-28 129.4 164 59.1
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.5e-28 129.4 136 64.0
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 2.5e-28 129.4 161 59.6
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 5.5e-28 128.3 141 61.7
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 7.2e-28 127.9 140 59.3
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 7.2e-28 127.9 143 58.7
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 9.4e-28 127.5 155 61.3
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 9.4e-28 127.5 136 64.0
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 1.6e-27 126.7 133 63.2
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 3.6e-27 125.6 161 57.8
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 1.0e-26 124.0 136 64.0
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.4e-26 123.6 157 60.5
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 1.4e-26 123.6 191 54.5
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 2.3e-26 122.9 146 63.0
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 2.3e-26 122.9 141 60.3
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 3.0e-26 122.5 157 59.9
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.0e-26 122.5 157 59.9
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 5.2e-26 121.7 117 68.4
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 1.1e-25 120.6 138 63.0
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 7.5e-25 117.9 157 56.7
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 7.5e-25 117.9 162 56.2
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 1.3e-24 117.1 157 58.0
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.7e-24 116.7 119 65.5
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.7e-24 116.7 119 65.5
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 8.2e-24 114.4 76 81.6
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 1.1e-23 114.0 125 60.8
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.1e-23 114.0 152 56.6
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 5.3e-23 111.7 167 54.5
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 7.0e-23 111.3 145 57.9
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 7.0e-23 111.3 161 55.3
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 9.1e-23 110.9 108 65.7
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 1.6e-22 110.2 169 53.3
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 2.7e-22 109.4 164 54.9
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 4.5e-22 108.6 165 53.9
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 4.5e-22 108.6 161 52.8
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 5.9e-22 108.2 72 79.2
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 5.9e-22 108.2 161 54.7
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 5.9e-22 108.2 161 54.0
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 1.7e-21 106.7 117 64.1
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 3.8e-21 105.5 145 58.6
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 1.5e-20 103.6 87 67.8
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 9.4e-20 100.9 137 54.7
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 1.6e-19 100.1 73 74.0
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 2.1e-19 99.8 132 59.1
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 2.1e-19 99.8 136 57.4
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 2.7e-19 99.4 141 53.9
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 2.7e-19 99.4 167 53.3
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 3.6e-19 99.0 137 55.5
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 4.7e-19 98.6 142 54.9
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 6.1e-19 98.2 59 89.8
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 8.0e-19 97.8 66 81.8
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 8.0e-19 97.8 94 64.9
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 1.0e-18 97.4 117 58.1
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 2.3e-18 96.3 88 63.6
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.5e-17 93.6 144 53.5
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.4e-17 92.4 90 64.4
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.4e-17 92.4 90 64.4
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.8e-15 86.7 161 45.3
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 4.5e-14 82.0 132 51.5
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 3.2e-12 75.9 124 51.6
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 5.5e-12 75.1 134 48.5
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 2.1e-11 73.2 69 75.4
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 3.6e-11 72.4 143 44.1
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 4.7e-11 72.0 101 53.5
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.8e-10 70.1 62 64.5
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 3.0e-10 69.3 107 47.7
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 3.0e-10 69.3 138 48.6


User provided reference genes

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