Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 7.8e-280 966.5 483 100.0
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 1.1e-278 962.6 483 99.6
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 1.9e-273 945.3 486 97.9
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 1.1e-265 919.5 483 95.2
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 6.0e-264 913.7 483 95.0
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 2.8e-253 878.2 483 91.3
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 9.0e-252 873.2 488 90.4
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 3.8e-242 841.3 482 88.4
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 1.7e-221 772.7 476 80.7
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 9.1e-212 740.3 385 94.5
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 3.6e-208 728.4 386 92.5
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 1.3e-202 709.9 390 89.7
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 1.5e-201 706.4 359 98.1
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 3.0e-199 698.7 425 78.1
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 3.0e-199 698.7 474 72.6
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 4.0e-199 698.4 424 78.1
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 7.5e-198 694.1 476 71.8
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.3e-197 693.3 445 76.0
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 3.7e-197 691.8 479 71.2
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.1e-196 690.3 445 75.3
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 1.8e-196 689.5 458 73.8
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 3.2e-196 688.7 473 71.2
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 7.0e-196 687.6 423 77.5
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 9.2e-196 687.2 420 77.4
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 1.2e-195 686.8 477 70.6
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 1.6e-195 686.4 419 77.3
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.6e-195 686.4 458 73.4
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 2.7e-195 685.6 477 69.8
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 1.7e-194 682.9 422 75.8
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 8.6e-194 680.6 463 71.9
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 1.5e-193 679.9 477 70.9
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 1.9e-193 679.5 454 72.2
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 5.6e-193 677.9 460 71.1
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 9.5e-193 677.2 470 70.4
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 1.6e-192 676.4 457 71.6
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 1.6e-192 676.4 421 75.1
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 2.8e-192 675.6 420 75.7
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 3.6e-192 675.2 518 65.8
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 6.2e-192 674.5 444 72.3
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 6.2e-192 674.5 420 76.0
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 1.1e-191 673.7 428 74.3
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 5.2e-191 671.4 421 75.5
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 1.5e-190 669.8 457 70.5
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 2.0e-190 669.5 420 75.5
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 3.4e-190 668.7 441 72.6
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 4.4e-190 668.3 474 70.9
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 4.4e-190 668.3 444 73.4
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 3.7e-189 665.2 448 72.8
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 3.7e-189 665.2 454 69.8
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 4.9e-189 664.8 422 74.9
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 6.4e-189 664.5 419 75.9
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 8.3e-189 664.1 433 74.1
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 1.4e-188 663.3 419 75.7
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 3.2e-188 662.1 423 74.0
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 5.4e-188 661.4 431 72.4
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 7.0e-188 661.0 482 67.4
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 9.2e-188 660.6 472 68.6
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 1.7e-186 656.4 424 73.6
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 5.0e-186 654.8 432 71.8
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 8.6e-186 654.1 421 72.9
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 1.1e-185 653.7 481 66.7
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 1.1e-185 653.7 423 74.0
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 5.6e-185 651.4 456 69.1
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 1.8e-183 646.4 422 73.0
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 4.0e-183 645.2 477 65.8
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 9.2e-180 634.0 358 86.0
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 4.6e-179 631.7 444 70.5
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 7.8e-179 630.9 564 59.0
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 9.5e-177 624.0 382 78.0
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 8.9e-175 617.5 424 70.3
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 1.7e-173 613.2 420 69.5
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 2.2e-173 612.8 382 76.7
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 3.2e-172 609.0 383 76.2
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 9.2e-172 607.4 473 65.1
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 9.2e-172 607.4 380 77.1
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 1.2e-171 607.1 494 64.2
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 2.1e-171 606.3 437 68.4
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 2.0e-166 589.7 469 63.3
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 2.2e-165 586.3 421 68.9
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 2.8e-160 569.3 385 70.9
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 4.8e-160 568.5 420 65.7
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 5.3e-159 565.1 428 65.7
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 1.5e-158 563.5 342 78.9
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 2.6e-158 562.8 398 69.3
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 1.4e-156 557.0 440 61.8
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 3.3e-153 545.8 421 65.3
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 3.1e-151 539.3 424 64.2
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 1.2e-150 537.3 421 62.5
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 3.8e-149 532.3 481 58.6
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 7.4e-145 518.1 313 78.0
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 5.1e-138 495.4 428 58.6
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 2.2e-125 453.4 460 52.0
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 1.7e-117 427.2 463 49.0
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 3.2e-108 396.4 242 75.2
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 2.7e-107 393.3 252 73.4
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 5.7e-97 359.0 438 46.1
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 2.7e-86 323.6 202 73.3
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 1.0e-85 321.6 326 52.8
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 3.9e-85 319.7 326 52.8
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 5.0e-85 319.3 283 57.2
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 2.3e-77 293.9 229 65.9
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 3.1e-74 283.5 179 77.7
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 3.9e-69 266.5 210 63.3
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 4.0e-58 229.9 448 37.1
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 6.8e-58 229.2 302 47.4
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 1.9e-52 211.1 183 57.9
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 1.3e-45 188.3 115 79.1
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 9.6e-36 155.6 93 76.3
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 4.2e-31 140.2 89 77.5
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 7.4e-28 129.4 88 69.3
Aa31LG7G15150 Aethionema arabicum HOM05D007030 ORTHO05D009159 9.7e-20 102.4 98 59.2
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 9.4e-15 85.9 58 67.2
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 4.5e-09 67.0 43 74.4
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 5.5e-07 60.1 244 23.8


User provided reference genes

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