Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06365 Brassica carinata HOM05D000709 ORTHO05D016765 1.4e-34 149.1 74 100.0
C05p24860 Brassica napus HOM05D000709 ORTHO05D002401 5.4e-23 110.5 51 100.0
A09p39660 Brassica napus HOM05D000709 ORTHO05D002401 1.7e-21 105.5 51 96.1
BcaC05g26650 Brassica carinata HOM05D000709 ORTHO05D002401 2.3e-21 105.1 48 100.0
BolC5t31215H Brassica oleracea HOM05D000709 ORTHO05D002401 2.3e-21 105.1 48 100.0
BraA09t39462Z Brassica rapa HOM05D000709 ORTHO05D002401 7.3e-20 100.1 48 95.8
Sp1g22630 Schrenkiella parvula HOM05D000709 ORTHO05D002401 2.4e-18 95.1 51 86.3
Carub.0001s2490 Capsella rubella HOM05D000709 ORTHO05D002401 2.2e-16 88.6 50 82.0
AT1G25580 Arabidopsis thaliana HOM05D000709 ORTHO05D002401 2.4e-15 85.1 50 78.0
CARHR025860 Cardamine hirsuta HOM05D000709 ORTHO05D002401 4.2e-15 84.3 50 76.0
Thhalv10007551m.g Eutrema salsugineum HOM05D000709 ORTHO05D002401 5.4e-15 84.0 51 74.5
Ciclev10031598m.g Citrus clementina HOM05D000709 ORTHO05D002401 4.6e-14 80.9 50 76.0
BcaC03g17780 Brassica carinata HOM05D000709 ORTHO05D016765 6.0e-14 80.5 51 74.5
C02p58050 Brassica napus HOM05D000709 ORTHO05D016765 6.0e-14 80.5 51 74.5
BolC2t11877H Brassica oleracea HOM05D000709 ORTHO05D002401 6.0e-14 80.5 51 74.5
Atru.chr11.1354 Acer truncatum HOM05D000709 ORTHO05D002401 7.9e-14 80.1 50 76.0
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 7.9e-14 80.1 76 56.6
THA.LOC104821963 Tarenaya hassleriana HOM05D000709 ORTHO05D002401 7.9e-14 80.1 47 74.5
BolC5t32226H Brassica oleracea HOM05D000709 ORTHO05D002401 1.8e-13 79.0 51 72.5
BcaC01g02660 Brassica carinata HOM05D000709 ORTHO05D016765 2.3e-13 78.6 40 87.5
C03p62240 Brassica napus HOM05D000709 ORTHO05D016765 2.3e-13 78.6 40 87.5
Lsat_1_v5_gn_3_57981 Lactuca sativa HOM05D000709 ORTHO05D002401 3.9e-13 77.8 50 68.0
arahy.Tifrunner.gnm1.ann1.919QYJ Arachis hypogaea HOM05D000709 ORTHO05D002401 5.1e-13 77.4 50 70.0
arahy.Tifrunner.gnm1.ann1.XMHS8A Arachis hypogaea HOM05D000709 ORTHO05D002401 5.1e-13 77.4 50 70.0
Eucgr.G02349 Eucalyptus grandis HOM05D000709 ORTHO05D002401 5.1e-13 77.4 50 74.0
HanXRQChr17g0552261 Helianthus annuus HOM05D000709 ORTHO05D002401 6.7e-13 77.0 50 66.0
ECA246G2234 Erigeron canadensis HOM05D000709 ORTHO05D002401 8.7e-13 76.6 50 66.0
BraA07t29046Z Brassica rapa HOM05D001835 ORTHO05D001899 1.1e-12 76.3 70 61.4
BcaC05g27047 Brassica carinata HOM05D000709 ORTHO05D002401 1.5e-12 75.9 46 76.1
BcaC05g27528 Brassica carinata HOM05D000709 ORTHO05D016765 1.5e-12 75.9 46 76.1
A07p12680 Brassica napus HOM05D000709 ORTHO05D002401 1.5e-12 75.9 70 61.4
C05p35060 Brassica napus HOM05D000709 ORTHO05D016765 1.5e-12 75.9 46 76.1
BolC5t31636H Brassica oleracea HOM05D000709 ORTHO05D002401 1.5e-12 75.9 51 70.6
Rhsim09G0112100 Rhododendron simsii HOM05D000709 ORTHO05D002401 1.5e-12 75.9 50 74.0
EL10Ac6g14495 Beta vulgaris HOM05D000709 ORTHO05D002401 1.9e-12 75.5 50 70.0
CSS0012182 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 1.9e-12 75.5 50 70.0
CSS0041233 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 1.9e-12 75.5 50 70.0
Cpa.g.sc53.116 Carica papaya HOM05D000709 ORTHO05D002401 1.9e-12 75.5 62 61.3
BcaC06g35188 Brassica carinata HOM05D000709 ORTHO05D002401 3.3e-12 74.7 51 68.6
Dinv16506 Davidia involucrata HOM05D000709 ORTHO05D002401 3.3e-12 74.7 50 72.0
Lj2g0017681 Lotus japonicus HOM05D000709 ORTHO05D002401 3.3e-12 74.7 50 68.0
Nn3g17722 Nelumbo nucifera HOM05D000709 ORTHO05D002401 4.3e-12 74.3 50 68.0
Cc11_g10610 Coffea canephora HOM05D000709 ORTHO05D002401 5.6e-12 73.9 50 72.0
CSS0037976 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 7.4e-12 73.6 50 70.0
CANSAT64G0846 Cannabis sativa HOM05D000709 ORTHO05D002401 7.4e-12 73.6 50 72.0
Actinidia16618 Actinidia chinensis HOM05D000709 ORTHO05D002401 9.6e-12 73.2 50 70.0
Actinidia38391 Actinidia chinensis HOM05D000709 ORTHO05D002401 9.6e-12 73.2 50 68.0
DCAR_023688 Daucus carota HOM05D000709 ORTHO05D002401 9.6e-12 73.2 50 66.0
Medtr5g053430 Medicago truncatula HOM05D000709 ORTHO05D002401 1.3e-11 72.8 50 68.0
Prupe.1G305300 Prunus persica HOM05D000709 ORTHO05D002401 1.3e-11 72.8 50 68.0
MBI12_g21978_MAGBIO Magnolia biondii HOM05D000709 ORTHO05D002401 1.6e-11 72.4 46 73.9
MD16G1048300 Malus domestica HOM05D000709 ORTHO05D002401 1.6e-11 72.4 50 66.0
Dinv21134 Davidia involucrata HOM05D000709 ORTHO05D002401 2.1e-11 72.0 46 73.9
Glyma.01G088200 Glycine max HOM05D000709 ORTHO05D002401 2.1e-11 72.0 50 66.0
HanXRQChr12g0386181 Helianthus annuus HOM05D000709 ORTHO05D002401 2.1e-11 72.0 47 61.7
HanXRQChr17g0565861 Helianthus annuus HOM05D000709 ORTHO05D016765 2.1e-11 72.0 47 61.7
Phvul.003G027100 Phaseolus vulgaris HOM05D000709 ORTHO05D002401 2.1e-11 72.0 50 66.0
Actinidia13674 Actinidia chinensis HOM05D000709 ORTHO05D002401 2.8e-11 71.6 50 66.0
arahy.Tifrunner.gnm1.ann1.13C0EN Arachis hypogaea HOM05D000709 ORTHO05D002401 2.8e-11 71.6 50 72.0
arahy.Tifrunner.gnm1.ann1.UCK419 Arachis hypogaea HOM05D000709 ORTHO05D002401 2.8e-11 71.6 50 72.0
Glyma.02G100200 Glycine max HOM05D000709 ORTHO05D002401 2.8e-11 71.6 50 66.0
PSO063G7345 Papaver somniferum HOM05D000709 ORTHO05D002401 2.8e-11 71.6 50 70.0
PSO782G4918 Papaver somniferum HOM05D000709 ORTHO05D002401 2.8e-11 71.6 50 70.0
Sed0013338 Sechium edule HOM05D000709 ORTHO05D002401 2.8e-11 71.6 50 70.0
vmacro10529 Vaccinium macrocarpon HOM05D000709 ORTHO05D002401 2.8e-11 71.6 51 68.6
VMungo1215G2333 Vigna mungo HOM05D000709 ORTHO05D002401 2.8e-11 71.6 50 64.0
MELO3C012215.2 Cucumis melo HOM05D000709 ORTHO05D002401 3.7e-11 71.2 50 68.0
Gorai.008G186300 Gossypium raimondii HOM05D000709 ORTHO05D002401 3.7e-11 71.2 50 72.0
Oeu041879.2 Olea europaea HOM05D000709 ORTHO05D002401 3.7e-11 71.2 50 68.0
SGA_v2.0_scaffold14G06821 Striga asiatica HOM05D000709 ORTHO05D002401 3.7e-11 71.2 50 66.0
Duzib248G0470 Durio zibethinus HOM05D000709 ORTHO05D002401 4.8e-11 70.9 50 70.0
Gohir.A12G170500 Gossypium hirsutum HOM05D000709 ORTHO05D002401 4.8e-11 70.9 50 70.0
Gohir.D12G173700 Gossypium hirsutum HOM05D000709 ORTHO05D002401 4.8e-11 70.9 50 70.0
QL01p045366 Quercus lobata HOM05D000709 ORTHO05D002401 6.2e-11 70.5 50 68.0
TAR622G0092 Trochodendron aralioides HOM05D000709 ORTHO05D002401 6.2e-11 70.5 50 68.0
CsaV3_5G033980 Cucumis sativus L. HOM05D000709 ORTHO05D002401 8.1e-11 70.1 50 66.0
BcaB03g14052 Brassica carinata HOM05D000709 ORTHO05D002401 1.1e-10 69.7 51 60.8
Glyma.20G185800 Glycine max HOM05D000709 ORTHO05D002401 1.1e-10 69.7 50 68.0
HanXRQChr15g0471111 Helianthus annuus HOM05D000709 ORTHO05D016765 1.1e-10 69.7 47 61.7
Potri.008G116600 Populus trichocarpa HOM05D000709 ORTHO05D002401 1.1e-10 69.7 50 68.0
Rhsim12G0081600 Rhododendron simsii HOM05D000709 ORTHO05D002401 1.1e-10 69.7 57 59.6
TPR.G2657 Trifolium pratense HOM05D000709 ORTHO05D002401 1.1e-10 69.7 50 64.0
BolC7t42397H Brassica oleracea HOM05D000709 ORTHO05D002401 1.4e-10 69.3 46 69.6
Duzib251G0863 Durio zibethinus HOM05D000709 ORTHO05D002401 1.4e-10 69.3 50 68.0
Oeu042026.1 Olea europaea HOM05D000709 ORTHO05D002401 1.4e-10 69.3 50 64.0
C07p18870 Brassica napus HOM05D000709 ORTHO05D002401 1.8e-10 68.9 48 66.7
ClCG05G023020 Citrullus lanatus HOM05D000709 ORTHO05D002401 1.8e-10 68.9 50 66.0
Migut.E00298 Erythranthe guttata HOM05D000709 ORTHO05D002401 1.8e-10 68.9 50 64.0
TWI31G0592 Tripterygium wilfordii HOM05D000709 ORTHO05D002401 1.8e-10 68.9 50 70.0
Hma1.2p1_0406F.1_g146040 Hydrangea macrophylla HOM05D000709 ORTHO05D002401 2.4e-10 68.6 46 71.7
Lalb_Chr10g0099731 Lupinus albus HOM05D000709 ORTHO05D002401 2.4e-10 68.6 50 66.0
Sed0020682 Sechium edule HOM05D000709 ORTHO05D002401 2.4e-10 68.6 50 66.0
CiPaw.15G003500 Carya illinoinensis HOM05D000709 ORTHO05D002401 3.1e-10 68.2 50 64.0
Psat0s2763g0040 Pisum sativum HOM05D000709 ORTHO05D002401 3.1e-10 68.2 50 64.0
TAR371G0746 Trochodendron aralioides HOM05D000709 ORTHO05D002401 3.1e-10 68.2 50 66.0
vmacro01365 Vaccinium macrocarpon HOM05D000709 ORTHO05D002401 3.1e-10 68.2 69 52.2
GSVIVG01011954001 Vitis vinifera HOM05D000709 ORTHO05D002401 3.1e-10 68.2 46 65.2
Sabra08G0088400 Salix brachista HOM05D000709 ORTHO05D002401 4.0e-10 67.8 45 68.9
Ca_05085_v3 Cicer arietinum L. HOM05D000709 ORTHO05D002401 5.3e-10 67.4 50 62.0
Sabra10G0098700 Salix brachista HOM05D000709 ORTHO05D002401 5.3e-10 67.4 69 50.7
THA.LOC104801756 Tarenaya hassleriana HOM05D000709 ORTHO05D002401 5.3e-10 67.4 50 66.0
FvH4_4g28090 Fragaria vesca HOM05D000709 ORTHO05D002401 6.9e-10 67.0 50 66.0
FAN12G0115 Fragaria x ananassa HOM05D000709 ORTHO05D002401 6.9e-10 67.0 50 66.0
Glyma.10G204700 Glycine max HOM05D000709 ORTHO05D002401 6.9e-10 67.0 50 64.0
Potri.010G129700 Populus trichocarpa HOM05D000709 ORTHO05D002401 6.9e-10 67.0 50 66.0
PGR119G0617 Punica granatum HOM05D000709 ORTHO05D002401 6.9e-10 67.0 46 69.6
Lalb_Chr04g0254941 Lupinus albus HOM05D000709 ORTHO05D002401 9.0e-10 66.6 50 64.0
Medtr1g093680 Medicago truncatula HOM05D000709 ORTHO05D002401 9.0e-10 66.6 49 65.3
RcHm_v2.0_Chr4g0435841 Rosa chinensis HOM05D000709 ORTHO05D002401 1.2e-09 66.2 50 64.0
FAN07G0271 Fragaria x ananassa HOM05D000709 ORTHO05D002401 1.5e-09 65.9 50 64.0
FAN17G2510 Fragaria x ananassa HOM05D000709 ORTHO05D002401 1.5e-09 65.9 50 64.0
Thecc.02G361300 Theobroma cacao HOM05D000709 ORTHO05D002401 1.5e-09 65.9 50 66.0
MD13G1046600 Malus domestica HOM05D000709 ORTHO05D002401 2.6e-09 65.1 50 60.0
Manes.06G072300 Manihot esculenta HOM05D000709 ORTHO05D002401 2.6e-09 65.1 50 62.0
FAN22G1336 Fragaria x ananassa HOM05D000709 ORTHO05D002401 3.4e-09 64.7 50 62.0
Nitab4.5_0004122g0040 Nicotiana tabacum HOM05D000709 ORTHO05D002401 3.4e-09 64.7 50 68.0
Solyc05g009840.3 Solanum lycopersicum HOM05D000709 ORTHO05D002401 3.4e-09 64.7 50 68.0
Sopen05g005650 Solanum pennellii HOM05D000709 ORTHO05D002401 3.4e-09 64.7 50 68.0
PGSC0003DMG400000809 Solanum tuberosum HOM05D000709 ORTHO05D002401 3.4e-09 64.7 50 68.0
Aqoxy3G03907 Aquilegia oxysepala HOM05D000709 ORTHO05D002401 5.8e-09 63.9 50 62.0
Manes.14G097400 Manihot esculenta HOM05D000709 ORTHO05D002401 5.8e-09 63.9 50 60.0
Nitab4.5_0011178g0010 Nicotiana tabacum HOM05D000709 ORTHO05D002401 1.7e-08 62.4 50 66.0
Zm00001eb280480 Zea mays HOM05D000709 ORTHO05D002401 1.7e-08 62.4 50 54.0
CAN.G184.90 Capsicum annuum HOM05D000709 ORTHO05D002401 4.9e-08 60.8 46 69.6
Zm00001eb280490 Zea mays HOM05D000709 ORTHO05D002401 8.4e-08 60.1 50 52.0
Peaxi162Scf00380g00219 Petunia axillaris HOM05D000709 ORTHO05D002401 2.5e-07 58.5 50 60.0
C08p08500 Brassica napus HOM05D000709 ORTHO05D002401 4.2e-07 57.8 44 59.1
Sc04g0006690 Simmondsia chinensis HOM05D000709 ORTHO05D002401 4.2e-07 57.8 50 62.0
Sc04g0006730 Simmondsia chinensis HOM05D000709 ORTHO05D002401 4.2e-07 57.8 50 62.0
Psat6g178440 Pisum sativum HOM05D000709 ORTHO05D002401 7.1e-07 57.0 49 61.2
AL1G39720 Arabidopsis lyrata HOM05D000709 ORTHO05D002401 1.6e-06 55.8 31 77.4


User provided reference genes

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