Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1727.6 880 100.0
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 0.0e+00 1578.9 880 91.2
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1569.7 880 91.0
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1556.2 878 90.5
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 0.0e+00 1553.5 878 90.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1534.6 878 89.3
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 0.0e+00 1455.3 884 84.3
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 0.0e+00 1380.9 883 81.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 0.0e+00 1334.3 884 78.1
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1308.9 884 76.7
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 0.0e+00 1283.1 881 75.3
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1225.3 880 73.2
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 0.0e+00 1208.0 905 70.4
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1178.7 885 71.5
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1075.1 892 67.2
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.9e-308 1062.4 881 63.0
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 3.3e-252 875.5 910 58.0
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.5e-241 838.6 886 52.5
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.5e-239 831.6 566 76.7
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.1e-234 817.4 881 51.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 2.6e-233 812.8 891 50.4
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.3e-232 810.4 882 50.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.0e-232 808.5 886 50.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 3.6e-230 802.4 882 49.8
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 4.7e-230 802.0 882 49.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 6.3e-227 791.6 883 49.5
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.2e-225 787.3 891 49.9
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 3.5e-225 785.8 897 48.8
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.0e-221 774.2 930 47.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 9.7e-220 767.7 885 48.2
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 2.2e-219 766.5 889 48.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.4e-218 763.1 885 49.0
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 3.5e-217 759.2 891 48.1
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.7e-216 756.9 889 47.9
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.7e-216 756.9 855 49.7
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 6.5e-216 755.0 892 47.6
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.2e-215 752.3 884 47.9
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.5e-215 751.9 889 47.5
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 5.5e-215 751.9 888 47.9
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 3.6e-214 749.2 881 47.7
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-212 744.2 889 47.2
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.6e-212 743.0 883 47.9
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.4e-212 742.7 889 47.1
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.7e-211 740.3 882 47.3
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.3e-211 738.4 882 47.3
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.4e-210 736.5 747 53.5
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 4.1e-210 735.7 888 46.2
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 9.1e-210 734.6 893 46.9
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.8e-208 729.2 893 46.8
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 6.5e-208 728.4 885 48.6
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 8.6e-208 728.0 868 46.3
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 7.2e-207 724.9 889 45.7
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.2e-206 724.2 889 45.7
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.1e-206 723.4 899 45.6
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.3e-205 719.9 891 45.7
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.0e-204 716.8 886 46.8
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.6e-204 716.5 889 46.9
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 7.5e-204 714.9 889 46.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.2e-201 707.6 890 45.1
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.7e-201 706.4 888 45.6
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.9e-199 700.3 754 50.9
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-198 697.6 906 45.5
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.1e-198 696.8 910 45.5
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 5.7e-196 688.7 841 45.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 3.2e-194 682.9 939 44.8
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.3e-192 677.6 893 44.2
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 6.6e-192 675.2 872 45.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 6.6e-192 675.2 890 44.8
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.5e-191 673.3 878 42.4
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 9.5e-191 671.4 951 42.2
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.2e-190 671.0 883 44.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.6e-190 670.6 858 46.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 3.6e-190 669.5 889 44.0
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 6.2e-190 668.7 892 44.3
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.7e-187 659.4 889 42.3
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.9e-186 657.1 890 41.9
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 3.2e-186 656.4 885 42.4
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.0e-184 651.4 899 43.2
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.6e-180 636.7 876 42.8
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 3.4e-180 636.3 890 41.0
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.1e-174 617.1 888 41.0
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 6.2e-174 615.5 957 39.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.4e-173 614.4 892 41.6
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.4e-173 613.6 901 39.8
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.9e-170 604.0 891 41.6
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-169 601.3 886 40.9
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 4.6e-169 599.4 735 46.8
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.5e-167 594.3 913 39.3
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 4.3e-167 592.8 893 39.8
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 4.3e-167 592.8 651 49.9
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 4.7e-166 589.3 741 44.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.2e-166 589.0 861 40.9
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.6e-161 574.3 893 39.0
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.6e-161 574.3 830 41.1
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.1e-161 573.9 700 45.6
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.1e-158 563.9 810 41.5
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.5e-156 557.8 886 39.8
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 3.4e-156 556.6 703 45.5
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 7.1e-154 548.9 550 57.5
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-151 541.2 944 36.4
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.1e-149 533.5 861 39.4
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 3.5e-145 520.0 714 42.9
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 2.8e-142 510.4 672 43.6
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.7e-139 501.1 624 43.9
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 5.5e-138 496.1 884 34.4
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.3e-136 491.5 701 42.5
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.7e-131 474.6 704 40.3
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.5e-124 449.9 677 41.7
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 2.7e-121 440.7 779 36.6
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 4.4e-119 433.3 553 45.8
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.8e-115 420.2 901 33.6
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 5.5e-114 416.4 641 39.3
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 3.6e-105 387.1 700 34.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-100 371.3 239 80.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.9e-99 367.5 787 31.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.5e-87 328.6 753 33.2
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 5.6e-82 310.1 260 61.9
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.2e-79 302.4 960 28.1
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.3e-78 298.9 236 64.0
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.6e-76 292.0 265 58.5
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 4.6e-76 290.4 736 29.8
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.4e-69 266.9 961 27.7
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.4e-69 266.9 961 27.7
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.5e-66 258.8 818 27.4
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 9.5e-66 256.1 604 31.8
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.7e-65 253.8 220 57.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 6.8e-64 250.0 193 66.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 5.4e-61 240.4 192 66.7
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 9.2e-61 239.6 523 31.4
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 6.2e-57 226.9 455 38.5
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 8.1e-57 226.5 193 61.1
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.1e-56 226.1 195 57.4
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.1e-49 201.8 341 36.1
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.6e-47 194.9 333 36.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 9.3e-45 186.4 266 41.0
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.7e-44 184.9 761 25.6
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.6e-41 174.5 240 41.7
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.4e-40 172.6 215 46.0
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.4e-40 172.6 143 65.0
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 6.4e-38 163.7 164 54.3
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.9e-37 162.2 232 41.8
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.0e-36 157.1 226 41.6
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.3e-35 155.2 188 45.2
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 8.1e-33 146.7 145 52.4
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.1e-32 144.8 218 40.8
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 4.5e-31 141.0 180 48.9
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 8.4e-30 136.7 84 83.3
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.5e-29 135.2 214 38.8
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 3.2e-29 134.8 123 61.0
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 9.6e-26 123.2 222 36.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.3e-25 122.9 108 59.3
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 6.9e-24 117.1 179 35.8
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 4.5e-23 114.4 83 71.1
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.3e-18 98.2 192 30.2
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.3e-17 96.3 100 51.0
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.4e-16 92.0 114 43.0
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 4.1e-16 91.3 98 42.9
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.5e-15 89.4 99 41.4
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.5e-13 82.0 188 30.9
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.7e-10 70.9 74 45.9
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.4e-07 61.6 68 50.0
BcaC07g36816 Brassica carinata HOM05D004248 ORTHO05D004978 5.0e-06 57.8 49 65.3


User provided reference genes

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