Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 3.0e-64 248.4 132 100.0
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 4.2e-58 228.0 132 91.7
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 4.2e-58 228.0 132 91.7
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 5.4e-58 227.6 133 91.7
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 4.6e-57 224.6 133 91.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.0e-56 223.4 131 88.5
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 8.7e-56 220.3 131 87.8
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 8.7e-56 220.3 131 86.3
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 3.3e-55 218.4 131 87.0
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 1.6e-54 216.1 131 85.5
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 2.8e-54 215.3 131 84.0
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 6.9e-53 210.7 154 77.9
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.5e-52 209.5 131 84.7
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 5.8e-52 207.6 131 83.2
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 9.9e-52 206.8 131 84.0
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 2.9e-51 205.3 119 85.7
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 4.9e-51 204.5 119 85.7
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 4.2e-50 201.4 131 80.2
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.2e-49 199.9 119 84.9
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.3e-48 195.7 131 78.6
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 1.9e-47 192.6 130 74.6
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 5.6e-47 191.0 126 76.2
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 9.6e-47 190.3 131 75.6
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 9.6e-47 190.3 129 76.0
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.3e-46 189.9 131 74.0
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.6e-46 189.5 129 76.0
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 2.1e-46 189.1 129 76.7
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 2.8e-46 188.7 131 76.3
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.8e-46 188.7 131 73.3
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 3.7e-46 188.3 129 75.2
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 3.7e-46 188.3 131 76.3
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 3.7e-46 188.3 131 72.5
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 3.7e-46 188.3 131 74.8
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 6.2e-46 187.6 131 74.8
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 6.2e-46 187.6 129 74.4
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 6.2e-46 187.6 131 74.0
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 6.2e-46 187.6 123 74.8
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.1e-45 186.8 131 74.0
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.1e-45 186.8 131 74.0
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.1e-45 186.8 124 75.8
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.1e-45 186.8 131 72.5
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.1e-45 186.8 131 73.3
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 1.4e-45 186.4 131 74.0
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 1.4e-45 186.4 131 74.0
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-45 186.4 131 74.0
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 1.8e-45 186.0 131 74.8
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.4e-45 185.7 131 74.0
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.4e-45 185.7 131 74.0
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.1e-45 185.3 131 74.0
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.1e-45 185.3 131 74.0
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 4.0e-45 184.9 132 70.5
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 5.3e-45 184.5 124 73.4
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 5.3e-45 184.5 129 74.4
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 5.3e-45 184.5 131 73.3
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 6.9e-45 184.1 122 74.6
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 6.9e-45 184.1 122 74.6
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.9e-45 184.1 131 73.3
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 6.9e-45 184.1 131 74.0
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 6.9e-45 184.1 131 72.5
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 9.0e-45 183.7 131 74.0
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 9.0e-45 183.7 126 73.0
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.2e-44 183.3 131 73.3
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 1.5e-44 183.0 131 74.0
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.5e-44 183.0 131 72.5
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 2.0e-44 182.6 131 73.3
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 2.0e-44 182.6 129 71.3
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.6e-44 182.2 129 72.1
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.6e-44 182.2 129 72.1
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 2.6e-44 182.2 131 73.3
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 3.4e-44 181.8 131 71.0
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 3.4e-44 181.8 131 71.0
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 3.4e-44 181.8 129 72.9
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 3.4e-44 181.8 131 72.5
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 3.4e-44 181.8 131 74.0
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 7.6e-44 180.6 131 72.5
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 1.0e-43 180.3 128 71.1
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 1.0e-43 180.3 131 70.2
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.3e-43 179.9 131 71.0
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 1.3e-43 179.9 131 71.0
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 1.3e-43 179.9 131 71.8
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.7e-43 179.5 131 71.0
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 2.2e-43 179.1 132 71.2
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 2.9e-43 178.7 131 70.2
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 3.8e-43 178.3 131 71.0
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 3.8e-43 178.3 131 70.2
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 4.9e-43 177.9 131 71.8
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 8.4e-43 177.2 131 69.5
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 8.4e-43 177.2 131 70.2
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 8.4e-43 177.2 131 70.2
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 8.4e-43 177.2 131 70.2
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 8.4e-43 177.2 130 70.8
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.4e-42 176.4 131 70.2
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 1.9e-42 176.0 132 69.7
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 2.5e-42 175.6 131 68.7
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 2.5e-42 175.6 131 69.5
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 7.1e-42 174.1 129 69.8
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 7.1e-42 174.1 131 67.9
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 7.1e-42 174.1 131 68.7
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 2.1e-41 172.6 129 70.5
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 4.6e-41 171.4 122 69.7
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 4.6e-41 171.4 131 67.2
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 4.6e-41 171.4 124 70.2
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 5.1e-40 167.9 131 67.2
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.5e-39 166.4 131 67.2
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.5e-39 166.4 131 67.2
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 5.7e-39 164.5 131 66.4
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 3.7e-38 161.8 131 65.6
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 3.7e-38 161.8 131 65.6
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 6.3e-38 161.0 131 67.2
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 5.9e-36 154.5 131 64.9
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 1.0e-35 153.7 129 63.6
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.7e-35 152.9 129 63.6
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.4e-34 149.8 129 62.8
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 2.5e-34 149.1 131 61.8
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.1e-31 140.2 126 56.3
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 4.3e-31 138.3 129 58.1
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 9.7e-31 137.1 150 52.7
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.1e-29 133.7 129 54.3
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 7.7e-28 127.5 88 73.9
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 2.2e-27 125.9 130 53.1
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 2.2e-27 125.9 87 74.7
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 2.9e-27 125.6 129 51.9
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 5.0e-27 124.8 87 73.6
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 3.2e-26 122.1 85 68.2
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 9.7e-23 110.5 100 58.0
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 2.2e-19 99.4 121 43.0
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.0e-16 90.5 61 73.8
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.3e-16 89.4 121 43.8
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 6.7e-16 87.8 121 41.3
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 1.6e-09 66.6 46 69.6
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 1.2e-07 60.5 35 77.1
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 7.5e-07 57.8 38 68.4
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 1.7e-06 56.6 44 68.2
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.8e-06 55.8 32 75.0
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 3.7e-06 55.5 50 54.0


User provided reference genes

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