Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06918 Brassica carinata HOM05D001183 ORTHO05D009082 1.0e-48 196.4 99 100.0
BcaNung06255 Brassica carinata HOM05D001183 ORTHO05D039368 1.0e-48 196.4 99 100.0
A06p31060 Brassica napus HOM05D001183 ORTHO05D009082 1.7e-43 179.1 99 90.9
BraA06t26048Z Brassica rapa HOM05D001183 ORTHO05D009082 1.7e-43 179.1 99 90.9
BolC3t18449H Brassica oleracea HOM05D001183 ORTHO05D009082 2.0e-41 172.2 99 90.9
C03p61900 Brassica napus HOM05D001183 ORTHO05D009082 5.9e-41 170.6 99 89.9
Thhalv10004325m.g Eutrema salsugineum HOM05D001183 ORTHO05D009082 7.7e-41 170.2 99 86.9
BcaC01g06913 Brassica carinata HOM05D001183 ORTHO05D009082 1.3e-40 169.5 99 89.9
AT5G64380 Arabidopsis thaliana HOM05D001183 ORTHO05D009082 1.0e-37 159.8 99 83.8
AL8G41740 Arabidopsis lyrata HOM05D001183 ORTHO05D009082 1.5e-36 156.0 99 81.8
Sp2g27470 Schrenkiella parvula HOM05D001183 ORTHO05D009082 1.5e-36 156.0 99 81.8
Carub.0008s2518 Capsella rubella HOM05D001183 ORTHO05D009082 1.1e-34 149.8 99 79.8
CARHR278320 Cardamine hirsuta HOM05D001183 ORTHO05D009082 1.2e-33 146.4 99 78.8
Aa31LG1G17520 Aethionema arabicum HOM05D001183 ORTHO05D009082 5.0e-32 141.0 104 76.0
THA.LOC104818451 Tarenaya hassleriana HOM05D001183 ORTHO05D009082 1.1e-23 113.2 103 66.0
Glyma.08G067500 Glycine max HOM05D001183 ORTHO05D009082 3.4e-20 101.7 92 59.8
QL11p025304 Quercus lobata HOM05D001183 ORTHO05D009082 3.4e-20 101.7 88 60.2
VMungo0251G3613 Vigna mungo HOM05D001183 ORTHO05D009082 3.4e-20 101.7 94 58.5
Atru.chr6.1278 Acer truncatum HOM05D001183 ORTHO05D009082 5.8e-20 100.9 101 55.4
Glyma.07G182300 Glycine max HOM05D001183 ORTHO05D009082 7.5e-20 100.5 89 57.3
Lalb_Chr16g0382971 Lupinus albus HOM05D001183 ORTHO05D009082 7.5e-20 100.5 92 58.7
vmacro01864 Vaccinium macrocarpon HOM05D001183 ORTHO05D009082 2.9e-19 98.6 77 67.5
Phvul.002G213400 Phaseolus vulgaris HOM05D001183 ORTHO05D009082 6.4e-19 97.4 94 57.4
arahy.Tifrunner.gnm1.ann1.1GV9IW Arachis hypogaea HOM05D001183 ORTHO05D009082 1.4e-18 96.3 88 58.0
CiPaw.05G029100 Carya illinoinensis HOM05D001183 ORTHO05D009082 1.4e-18 96.3 100 57.0
PSO170G3507 Papaver somniferum HOM05D001183 ORTHO05D009082 1.4e-18 96.3 82 57.3
PSO210G3221 Papaver somniferum HOM05D001183 ORTHO05D009082 1.4e-18 96.3 82 57.3
Hma1.2p1_1093F.1_g256270 Hydrangea macrophylla HOM05D001183 ORTHO05D039368 2.4e-18 95.5 80 65.0
CSS0030665 Camellia sinensis var. sinensis HOM05D001183 ORTHO05D009082 3.2e-18 95.1 81 63.0
Cpa.g.sc20.7 Carica papaya HOM05D001183 ORTHO05D009082 3.2e-18 95.1 108 52.8
Ca_18385_v3 Cicer arietinum L. HOM05D001183 ORTHO05D009082 3.2e-18 95.1 89 58.4
Haze_10509 Corylus avellana HOM05D001183 ORTHO05D009082 5.4e-18 94.4 81 61.7
TPR.G2852 Trifolium pratense HOM05D001183 ORTHO05D009082 5.4e-18 94.4 99 52.5
GSVIVG01012513001 Vitis vinifera HOM05D001183 ORTHO05D009082 5.4e-18 94.4 85 61.2
arahy.Tifrunner.gnm1.ann1.UFG3JK Arachis hypogaea HOM05D001183 ORTHO05D009082 7.0e-18 94.0 83 60.2
Ah.01g007380 Amaranthus hybridus HOM05D001183 ORTHO05D009082 9.2e-18 93.6 80 63.8
Thecc.02G128400 Theobroma cacao HOM05D001183 ORTHO05D009082 1.2e-17 93.2 87 57.5
COL.COLO4_32402 Corchorus olitorius HOM05D001183 ORTHO05D009082 2.0e-17 92.4 83 57.8
Actinidia00309 Actinidia chinensis HOM05D001183 ORTHO05D009082 2.7e-17 92.0 102 53.9
Dinv24146 Davidia involucrata HOM05D001183 ORTHO05D009082 2.7e-17 92.0 84 60.7
Sed0027156 Sechium edule HOM05D001183 ORTHO05D009082 3.5e-17 91.7 80 61.2
Cfa005745 Carpinus fangiana HOM05D001183 ORTHO05D009082 4.6e-17 91.3 82 61.0
MD05G1048200 Malus domestica HOM05D001183 ORTHO05D009082 4.6e-17 91.3 100 56.0
AUR62027100 Chenopodium quinoa HOM05D001183 ORTHO05D009082 6.0e-17 90.9 73 65.8
Manes.10G097600 Manihot esculenta HOM05D001183 ORTHO05D009082 6.0e-17 90.9 101 57.4
Aqoxy5G01374 Aquilegia oxysepala HOM05D001183 ORTHO05D009082 1.0e-16 90.1 103 50.5
AUR62012876 Chenopodium quinoa HOM05D001183 ORTHO05D009082 1.3e-16 89.7 73 64.4
EL10Ac9g22062 Beta vulgaris HOM05D001183 ORTHO05D009082 1.7e-16 89.4 73 64.4
Gohir.A12G016800 Gossypium hirsutum HOM05D001183 ORTHO05D009082 5.0e-16 87.8 80 57.5
Lj9A347T54 Lonicera japonica HOM05D001183 ORTHO05D009082 6.6e-16 87.4 86 57.0
SEGI_41082 Sequoiadendron giganteum HOM05D001183 ORTHO05D009082 8.6e-16 87.0 92 52.2
MELO3C018610.2 Cucumis melo HOM05D001183 ORTHO05D009082 1.1e-15 86.7 75 62.7
DCAR_001855 Daucus carota HOM05D001183 ORTHO05D009082 1.1e-15 86.7 80 55.0
Eucgr.I02616 Eucalyptus grandis HOM05D001183 ORTHO05D009082 1.1e-15 86.7 97 56.7
Gohir.D12G017500 Gossypium hirsutum HOM05D001183 ORTHO05D009082 1.1e-15 86.7 105 48.6
Gorai.008G017700 Gossypium raimondii HOM05D001183 ORTHO05D009082 1.1e-15 86.7 105 48.6
PGR142G0004 Punica granatum HOM05D001183 ORTHO05D009082 1.1e-15 86.7 88 56.8
Cc02_g20870 Coffea canephora HOM05D001183 ORTHO05D009082 1.9e-15 85.9 86 54.7
CsaV3_7G006840 Cucumis sativus L. HOM05D001183 ORTHO05D009082 1.9e-15 85.9 84 59.5
Medtr4g093620 Medicago truncatula HOM05D001183 ORTHO05D009082 1.9e-15 85.9 97 50.5
Psat7g101480 Pisum sativum HOM05D001183 ORTHO05D009082 1.9e-15 85.9 98 51.0
TAR628G1125 Trochodendron aralioides HOM05D001183 ORTHO05D009082 1.9e-15 85.9 95 53.7
Migut.N01099 Erythranthe guttata HOM05D001183 ORTHO05D009082 2.5e-15 85.5 100 50.0
Prupe.8G070500 Prunus persica HOM05D001183 ORTHO05D009082 2.5e-15 85.5 105 48.6
CSS0009735 Camellia sinensis var. sinensis HOM05D001183 ORTHO05D009082 4.3e-15 84.7 81 60.5
Sabra17G0029100 Salix brachista HOM05D001183 ORTHO05D009082 4.3e-15 84.7 84 57.1
Atru.chr6.1280 Acer truncatum HOM05D001183 ORTHO05D009082 5.6e-15 84.3 56 73.2
ClCG09G016120 Citrullus lanatus HOM05D001183 ORTHO05D009082 9.5e-15 83.6 81 58.0
FvH4_2g11590 Fragaria vesca HOM05D001183 ORTHO05D009082 1.2e-14 83.2 71 56.3
Ciclev10028540m.g Citrus clementina HOM05D001183 ORTHO05D009082 1.6e-14 82.8 108 50.0
FAN24G0493 Fragaria x ananassa HOM05D001183 ORTHO05D009082 1.6e-14 82.8 91 47.3
Lj4g0012172 Lotus japonicus HOM05D001183 ORTHO05D009082 2.8e-14 82.0 109 48.6
FAN15G0170 Fragaria x ananassa HOM05D001183 ORTHO05D009082 3.6e-14 81.6 91 46.2
HanXRQChr09g0246301 Helianthus annuus HOM05D001183 ORTHO05D009082 3.6e-14 81.6 83 56.6
Potri.017G042900 Populus trichocarpa HOM05D001183 ORTHO05D009082 3.6e-14 81.6 84 58.3
SalBow6G3698 Salvia bowleyana HOM05D001183 ORTHO05D009082 3.6e-14 81.6 99 48.5
TWI14G1146 Tripterygium wilfordii HOM05D001183 ORTHO05D009082 3.6e-14 81.6 82 57.3
CAN.G504.88 Capsicum annuum HOM05D001183 ORTHO05D009082 4.7e-14 81.3 78 56.4
CDE02G4631 Ceratophyllum demersum HOM05D001183 ORTHO05D009082 6.2e-14 80.9 80 57.5
RcHm_v2.0_Chr6g0270781 Rosa chinensis HOM05D001183 ORTHO05D009082 8.1e-14 80.5 75 60.0
Peaxi162Scf00299g00530 Petunia axillaris HOM05D001183 ORTHO05D009082 1.1e-13 80.1 78 57.7
Sopen01g048390 Solanum pennellii HOM05D001183 ORTHO05D009082 1.1e-13 80.1 89 49.4
Lsat_1_v5_gn_9_115760 Lactuca sativa HOM05D001183 ORTHO05D009082 1.4e-13 79.7 74 60.8
MBI16_g27570_MAGBIO Magnolia biondii HOM05D001183 ORTHO05D009082 2.3e-13 79.0 99 46.5
Oeu014198.2 Olea europaea HOM05D001183 ORTHO05D009082 2.3e-13 79.0 82 56.1
PGSC0003DMG400033584 Solanum tuberosum HOM05D001183 ORTHO05D009082 3.1e-13 78.6 89 50.6
Solyc01g106010.3 Solanum lycopersicum HOM05D001183 ORTHO05D009082 4.0e-13 78.2 89 48.3
Sc05g0005540 Simmondsia chinensis HOM05D001183 ORTHO05D009082 5.2e-13 77.8 72 56.9
Nn5g29870 Nelumbo nucifera HOM05D001183 ORTHO05D009082 6.8e-13 77.4 103 47.6
ATR0767G009 Amborella trichopoda HOM05D001183 ORTHO05D009082 1.2e-12 76.6 102 50.0
HPP92_013197 Vanilla planifolia HOM05D001183 ORTHO05D009082 2.0e-12 75.9 89 51.7
Hund06465 Selenicereus undatus HOM05D001183 ORTHO05D009082 2.2e-11 72.4 73 54.8
Nitab4.5_0001636g0060 Nicotiana tabacum HOM05D001183 ORTHO05D009082 4.9e-11 71.2 77 51.9
Nitab4.5_0002095g0090 Nicotiana tabacum HOM05D001183 ORTHO05D009082 3.2e-10 68.6 77 51.9
Pp3c18_4950 Physcomitrium patens HOM05D001183 ORTHO05D009082 2.7e-09 65.5 60 55.0
unitig_8.g3416 Utricularia gibba HOM05D001183 ORTHO05D009082 1.3e-08 63.2 81 49.4
Pp3c22_22950 Physcomitrium patens HOM05D001183 ORTHO05D009082 2.3e-08 62.4 60 55.0
Os06g0664200 Oryza sativa ssp. japonica HOM05D001183 ORTHO05D009082 3.9e-08 61.6 73 49.3
SGA_v2.0_scaffold337G49164 Striga asiatica HOM05D001183 ORTHO05D009082 3.9e-08 61.6 64 51.6
Mapoly0066s0105 Marchantia polymorpha HOM05D001183 ORTHO05D009082 5.6e-07 57.8 74 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1954 Anthoceros agrestis HOM05D001183 ORTHO05D009082 3.6e-06 55.1 88 42.0
Zm00001eb389720 Zea mays HOM05D001183 ORTHO05D009082 3.6e-06 55.1 57 50.9


User provided reference genes

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