Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06246 Brassica carinata HOM05D003650 ORTHO05D004213 1.3e-238 829.3 404 100.0
BolC3t15166H Brassica oleracea HOM05D003650 ORTHO05D004213 1.9e-231 805.4 401 98.3
C03p27940 Brassica napus HOM05D003650 ORTHO05D004213 5.6e-231 803.9 401 97.8
A03p23420 Brassica napus HOM05D003650 ORTHO05D004213 3.4e-228 794.7 401 96.8
BraA03t11559Z Brassica rapa HOM05D003650 ORTHO05D004213 7.6e-228 793.5 401 96.5
Thhalv10016286m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 4.8e-222 774.2 405 92.3
Sp4g24040 Schrenkiella parvula HOM05D003650 ORTHO05D004213 3.1e-221 771.5 405 91.9
Carub.0004s2405 Capsella rubella HOM05D003650 ORTHO05D004213 5.1e-216 754.2 405 89.6
AL4G40080 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 9.6e-215 750.0 406 89.7
AT2G41770 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 9.6e-215 750.0 406 89.9
CARHR136860 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.2e-212 743.0 405 88.1
Aa31LG1G23780 Aethionema arabicum HOM05D003650 ORTHO05D004213 5.0e-211 737.6 403 88.8
AL5G38950 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 2.1e-209 732.3 402 86.8
BcaNung02835 Brassica carinata HOM05D003650 ORTHO05D004213 7.9e-209 730.3 409 87.3
Carub.0005s2426 Capsella rubella HOM05D003650 ORTHO05D004213 1.3e-208 729.6 402 86.3
Thhalv10005801m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 3.0e-208 728.4 402 85.6
AT3G57420 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 7.4e-207 723.8 402 85.6
Sp5g05180 Schrenkiella parvula HOM05D003650 ORTHO05D004213 9.7e-207 723.4 402 84.3
THA.LOC104802108 Tarenaya hassleriana HOM05D003650 ORTHO05D004213 1.6e-206 722.6 402 85.6
BraA05t19245Z Brassica rapa HOM05D003650 ORTHO05D004213 1.8e-205 719.2 400 87.8
A05p02520 Brassica napus HOM05D003650 ORTHO05D004213 4.1e-205 718.0 400 87.5
C04p02980 Brassica napus HOM05D003650 ORTHO05D004213 4.5e-204 714.5 400 87.2
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 4.5e-204 714.5 401 87.5
CARHR167620 Cardamine hirsuta HOM05D003650 ORTHO05D004213 9.7e-199 696.8 402 82.8
Cpa.g.sc92.50 Carica papaya HOM05D003650 ORTHO05D004213 3.2e-186 655.2 405 76.0
Thecc.05G153700 Theobroma cacao HOM05D003650 ORTHO05D004213 3.2e-186 655.2 404 76.5
Duzib128G1026 Durio zibethinus HOM05D003650 ORTHO05D004213 3.0e-184 648.7 404 76.2
COL.COLO4_28278 Corchorus olitorius HOM05D003650 ORTHO05D004213 4.0e-184 648.3 404 76.2
Duzib093G1511 Durio zibethinus HOM05D003650 ORTHO05D004213 6.7e-184 647.5 404 76.0
Duzib205G0897 Durio zibethinus HOM05D003650 ORTHO05D004213 1.2e-183 646.7 404 76.7
Gohir.D09G118400 Gossypium hirsutum HOM05D003650 ORTHO05D004213 3.7e-182 641.7 403 75.4
CiPaw.09G038100 Carya illinoinensis HOM05D003650 ORTHO05D004213 4.8e-182 641.3 402 76.1
Haze_19859 Corylus avellana HOM05D003650 ORTHO05D004213 1.4e-181 639.8 405 74.8
Dinv12480 Davidia involucrata HOM05D003650 ORTHO05D004213 1.8e-181 639.4 400 76.0
Gohir.A09G122300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 4.1e-181 638.3 404 75.0
Gorai.006G136600 Gossypium raimondii HOM05D003650 ORTHO05D004213 4.1e-181 638.3 404 74.5
Eucgr.A02349 Eucalyptus grandis HOM05D003650 ORTHO05D004213 7.0e-181 637.5 406 74.6
CiPaw.10G033200 Carya illinoinensis HOM05D003650 ORTHO05D004213 9.1e-181 637.1 404 75.2
Gohir.A09G122200 Gossypium hirsutum HOM05D003650 ORTHO05D004213 1.2e-180 636.7 404 75.0
CANSAT80G1317 Cannabis sativa HOM05D003650 ORTHO05D004213 1.6e-180 636.3 404 74.5
TWI77G0711 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 1.6e-180 636.3 406 73.6
TAR636G3054 Trochodendron aralioides HOM05D003650 ORTHO05D004213 1.6e-180 636.3 402 74.1
CANSAT80G0970 Cannabis sativa HOM05D003650 ORTHO05D004213 2.0e-180 636.0 404 74.3
CSS0010444 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 3.5e-180 635.2 402 74.4
PGR004G2044 Punica granatum HOM05D003650 ORTHO05D004213 2.2e-179 632.5 406 74.6
TWI74G1194 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 3.8e-179 631.7 406 73.4
QL07p000311 Quercus lobata HOM05D003650 ORTHO05D004213 9.4e-178 627.1 407 73.7
Sc13g0001770 Simmondsia chinensis HOM05D003650 ORTHO05D004213 9.4e-178 627.1 411 72.3
TAR633G1518 Trochodendron aralioides HOM05D003650 ORTHO05D004213 2.1e-177 625.9 400 73.2
Nn2g15253 Nelumbo nucifera HOM05D003650 ORTHO05D004213 2.7e-177 625.5 402 73.4
Hma1.2p1_2002F.1_g310720 Hydrangea macrophylla HOM05D003650 ORTHO05D004213 1.4e-176 623.2 402 73.6
Gorai.006G136700 Gossypium raimondii HOM05D003650 ORTHO05D004213 2.3e-176 622.5 403 73.7
MELO3C009717.2 Cucumis melo HOM05D003650 ORTHO05D004213 8.8e-176 620.5 402 72.4
arahy.Tifrunner.gnm1.ann1.YDMB1U Arachis hypogaea HOM05D003650 ORTHO05D004213 1.2e-175 620.2 407 72.5
Phvul.007G252800 Phaseolus vulgaris HOM05D003650 ORTHO05D004213 1.2e-175 620.2 400 73.2
vmacro07855 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 1.2e-175 620.2 407 72.5
arahy.Tifrunner.gnm1.ann1.MS35EQ Arachis hypogaea HOM05D003650 ORTHO05D004213 1.5e-175 619.8 407 72.5
Rhsim03G0022300 Rhododendron simsii HOM05D003650 ORTHO05D004213 1.5e-175 619.8 407 73.2
Hund19149 Selenicereus undatus HOM05D003650 ORTHO05D004213 2.0e-175 619.4 410 72.0
CsaV3_3G039750 Cucumis sativus L. HOM05D003650 ORTHO05D004213 2.6e-175 619.0 402 72.4
Actinidia09330 Actinidia chinensis HOM05D003650 ORTHO05D004213 5.7e-175 617.8 400 73.0
ClCG10G016580 Citrullus lanatus HOM05D003650 ORTHO05D004213 5.7e-175 617.8 402 72.1
Manes.09G021900 Manihot esculenta HOM05D003650 ORTHO05D004213 7.5e-175 617.5 411 72.5
HanXRQChr10g0288771 Helianthus annuus HOM05D003650 ORTHO05D004213 9.8e-175 617.1 401 73.8
EL10Ac3g07088 Beta vulgaris HOM05D003650 ORTHO05D004213 1.3e-174 616.7 407 71.3
Aqoxy2G00151 Aquilegia oxysepala HOM05D003650 ORTHO05D004213 1.7e-174 616.3 400 71.5
Medtr0121s0010 Medicago truncatula HOM05D003650 ORTHO05D004213 1.7e-174 616.3 392 73.5
VMungo0720G2955 Vigna mungo HOM05D003650 ORTHO05D004213 1.7e-174 616.3 400 73.2
Lsat_1_v5_gn_9_29041 Lactuca sativa HOM05D003650 ORTHO05D004213 2.2e-174 615.9 402 73.4
Lj5g0024914 Lotus japonicus HOM05D003650 ORTHO05D004213 3.7e-174 615.1 404 71.8
Rhsim03G0021200 Rhododendron simsii HOM05D003650 ORTHO05D004213 3.7e-174 615.1 409 72.4
TPR.G10642 Trifolium pratense HOM05D003650 ORTHO05D004213 4.8e-174 614.8 392 73.2
Ah.13g076450 Amaranthus hybridus HOM05D003650 ORTHO05D004213 6.3e-174 614.4 409 70.7
Sed0014274 Sechium edule HOM05D003650 ORTHO05D004213 1.8e-173 612.8 403 71.5
MD12G1073600 Malus domestica HOM05D003650 ORTHO05D004213 9.1e-173 610.5 400 72.5
MD14G1071900 Malus domestica HOM05D003650 ORTHO05D004213 9.1e-173 610.5 401 71.8
Ca_26017_v3 Cicer arietinum L. HOM05D003650 ORTHO05D004213 1.6e-172 609.8 411 70.1
Manes.08G050700 Manihot esculenta HOM05D003650 ORTHO05D004213 2.7e-172 609.0 412 70.9
Glyma.10G097600 Glycine max HOM05D003650 ORTHO05D004213 3.5e-172 608.6 400 72.0
Lalb_Chr06g0173451 Lupinus albus HOM05D003650 ORTHO05D004213 3.5e-172 608.6 400 71.5
Nitab4.5_0010636g0040 Nicotiana tabacum HOM05D003650 ORTHO05D004213 3.5e-172 608.6 406 71.4
Oeu023110.1 Olea europaea HOM05D003650 ORTHO05D004213 5.9e-172 607.8 407 72.5
Ciclev10004391m.g Citrus clementina HOM05D003650 ORTHO05D004213 1.7e-171 606.3 402 72.9
Prupe.7G061300 Prunus persica HOM05D003650 ORTHO05D004213 6.5e-171 604.4 400 72.5
Psat6g120000 Pisum sativum HOM05D003650 ORTHO05D004213 8.6e-171 604.0 413 68.8
Nitab4.5_0005195g0070 Nicotiana tabacum HOM05D003650 ORTHO05D004213 1.5e-170 603.2 406 70.7
Glyma.02G184100 Glycine max HOM05D003650 ORTHO05D004213 3.2e-170 602.1 400 71.5
ECA247G3671 Erigeron canadensis HOM05D003650 ORTHO05D004213 5.5e-170 601.3 392 71.9
DCAR_013601 Daucus carota HOM05D003650 ORTHO05D004213 7.2e-170 600.9 400 69.8
Sopen04g007820 Solanum pennellii HOM05D003650 ORTHO05D004213 7.2e-170 600.9 410 69.3
PSO384G3418 Papaver somniferum HOM05D003650 ORTHO05D004213 9.5e-170 600.5 406 69.7
AUR62024446 Chenopodium quinoa HOM05D003650 ORTHO05D004213 2.1e-169 599.4 410 69.5
Lalb_Chr20g0110481 Lupinus albus HOM05D003650 ORTHO05D004213 2.8e-169 599.0 400 70.5
PSO339G5560 Papaver somniferum HOM05D003650 ORTHO05D004213 2.8e-169 599.0 406 69.7
PGSC0003DMG400027249 Solanum tuberosum HOM05D003650 ORTHO05D004213 2.8e-169 599.0 410 69.3
Lj2A385G21 Lonicera japonica HOM05D003650 ORTHO05D004213 3.6e-169 598.6 401 70.3
Peaxi162Scf00130g00016 Petunia axillaris HOM05D003650 ORTHO05D004213 3.6e-169 598.6 406 70.0
Potri.016G055700 Populus trichocarpa HOM05D003650 ORTHO05D004213 1.0e-168 597.0 415 69.6
Potri.006G051000 Populus trichocarpa HOM05D003650 ORTHO05D004213 3.0e-168 595.5 413 69.7
FAN14G5543 Fragaria x ananassa HOM05D003650 ORTHO05D004213 5.2e-168 594.7 402 71.4
FvH4_6g23790 Fragaria vesca HOM05D003650 ORTHO05D004213 6.8e-168 594.3 402 71.1
Sabra16G0058400 Salix brachista HOM05D003650 ORTHO05D004213 1.2e-167 593.6 415 68.9
FAN05G4085 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.5e-167 593.2 402 71.1
RcHm_v2.0_Chr3g0482321 Rosa chinensis HOM05D003650 ORTHO05D004213 2.6e-167 592.4 402 70.4
SGA_v2.0_scaffold69G23114 Striga asiatica HOM05D003650 ORTHO05D004213 9.8e-167 590.5 405 67.7
FAN09G0940 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.3e-166 590.1 402 70.9
Ah.04g151780 Amaranthus hybridus HOM05D003650 ORTHO05D004213 2.8e-166 589.0 406 69.0
Sabra06G0035700 Salix brachista HOM05D003650 ORTHO05D004213 8.3e-166 587.4 409 68.9
FAN02G1020 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.1e-165 587.0 402 70.1
Oeu008162.1 Olea europaea HOM05D003650 ORTHO05D004213 1.1e-165 587.0 400 69.8
MSTRG.6431 Avicennia marina HOM05D003650 ORTHO05D004213 2.4e-165 585.9 405 68.4
GSVIVG01033278001 Vitis vinifera HOM05D003650 ORTHO05D004213 4.1e-165 585.1 402 70.9
CDE07G0124 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 5.4e-165 584.7 404 68.1
SalBow6G5443 Salvia bowleyana HOM05D003650 ORTHO05D004213 2.7e-164 582.4 404 69.1
CDE11G0464 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 3.5e-164 582.0 404 68.1
Nn7g36273 Nelumbo nucifera HOM05D003650 ORTHO05D004213 7.8e-164 580.9 401 69.1
Migut.J01760 Erythranthe guttata HOM05D003650 ORTHO05D004213 3.8e-163 578.6 405 66.9
Dinv09321 Davidia involucrata HOM05D003650 ORTHO05D004213 3.6e-161 572.0 401 67.6
CAN.G676.68 Capsicum annuum HOM05D003650 ORTHO05D004213 4.0e-160 568.5 404 66.3
Actinidia39226 Actinidia chinensis HOM05D003650 ORTHO05D004213 8.9e-160 567.4 404 68.6
Cc06_g17090 Coffea canephora HOM05D003650 ORTHO05D004213 1.5e-159 566.6 408 67.6
AUR62026036 Chenopodium quinoa HOM05D003650 ORTHO05D004213 3.4e-159 565.5 351 73.8
ECA248G2213 Erigeron canadensis HOM05D003650 ORTHO05D004213 1.1e-157 560.5 404 66.1
MD07G1018300 Malus domestica HOM05D003650 ORTHO05D004213 2.4e-157 559.3 401 67.3
CSS0046501 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 3.2e-157 558.9 404 66.6
CSS0035654 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 5.4e-157 558.1 404 66.3
HanXRQChr01g0008741 Helianthus annuus HOM05D003650 ORTHO05D004213 7.0e-157 557.8 404 65.8
Lsat_1_v5_gn_5_161461 Lactuca sativa HOM05D003650 ORTHO05D004213 7.0e-157 557.8 404 65.1
vmacro13691 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 5.9e-156 554.7 402 64.4
Prupe.2G020200 Prunus persica HOM05D003650 ORTHO05D004213 7.8e-156 554.3 402 64.9
Solyc01g087600.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 6.6e-155 551.2 400 64.8
Cc02_g29000 Coffea canephora HOM05D003650 ORTHO05D004213 1.1e-154 550.4 401 63.8
Nitab4.5_0000707g0190 Nicotiana tabacum HOM05D003650 ORTHO05D004213 1.9e-154 549.7 400 64.5
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 4.3e-154 548.5 407 64.4
Sopen01g034570 Solanum pennellii HOM05D003650 ORTHO05D004213 7.3e-154 547.7 400 64.2
Nitab4.5_0008441g0020 Nicotiana tabacum HOM05D003650 ORTHO05D004213 1.2e-153 547.0 400 64.5
PGSC0003DMG400006853 Solanum tuberosum HOM05D003650 ORTHO05D004213 1.2e-153 547.0 400 64.2
CAN.G219.62 Capsicum annuum HOM05D003650 ORTHO05D004213 4.7e-153 545.0 400 64.0
Rhsim07G0058200 Rhododendron simsii HOM05D003650 ORTHO05D004213 1.1e-152 543.9 402 63.9
Peaxi162Scf00694g00117 Petunia axillaris HOM05D003650 ORTHO05D004213 6.8e-152 541.2 400 63.2
Sed0006713 Sechium edule HOM05D003650 ORTHO05D004213 8.9e-152 540.8 400 65.0
CsaV3_7G030820 Cucumis sativus L. HOM05D003650 ORTHO05D004213 2.0e-151 539.7 400 65.0
FAN10G4002 Fragaria x ananassa HOM05D003650 ORTHO05D004213 4.4e-151 538.5 402 63.4
CANSAT80G2225 Cannabis sativa HOM05D003650 ORTHO05D004213 5.8e-151 538.1 376 65.7
MELO3C023570.2 Cucumis melo HOM05D003650 ORTHO05D004213 1.3e-150 537.0 400 64.2
FvH4_7g01460 Fragaria vesca HOM05D003650 ORTHO05D004213 4.9e-150 535.0 402 63.7
RcHm_v2.0_Chr1g0317301 Rosa chinensis HOM05D003650 ORTHO05D004213 1.9e-149 533.1 403 64.0
FAN06G0077 Fragaria x ananassa HOM05D003650 ORTHO05D004213 3.2e-149 532.3 402 63.2
ClCG09G003920 Citrullus lanatus HOM05D003650 ORTHO05D004213 1.7e-147 526.6 400 64.0
SEGI_32089 Sequoiadendron giganteum HOM05D003650 ORTHO05D004213 1.1e-144 517.3 406 60.6
ATR0626G026 Amborella trichopoda HOM05D003650 ORTHO05D004213 2.3e-144 516.2 402 61.9
Oeu027406.1 Olea europaea HOM05D003650 ORTHO05D004213 2.2e-142 509.6 402 61.7
HPP92_010728 Vanilla planifolia HOM05D003650 ORTHO05D004213 3.4e-135 485.7 408 59.6
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 4.1e-133 478.8 419 58.9
Zm00001eb287230 Zea mays HOM05D003650 ORTHO05D004213 2.3e-131 473.0 319 69.3
unitig_26.g9047 Utricularia gibba HOM05D003650 ORTHO05D004213 1.6e-129 466.8 362 62.7
Lju124C41T4 Lonicera japonica HOM05D003650 ORTHO05D004213 6.2e-129 464.9 400 59.8
Solyc04g015740.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 1.7e-126 456.8 410 56.3
Atru.chr1.1095 Acer truncatum HOM05D003650 ORTHO05D004213 3.5e-124 449.1 240 83.8
AL4G39860 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 5.6e-122 441.8 293 77.8
Zm00001eb329540 Zea mays HOM05D003650 ORTHO05D004213 2.9e-110 402.9 366 55.5
Mapoly0004s0304 Marchantia polymorpha HOM05D003650 ORTHO05D004213 3.8e-110 402.5 360 52.2
Os07g0656400 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 6.0e-108 395.2 321 58.3
Dinv39600 Davidia involucrata HOM05D003650 ORTHO05D004213 1.8e-107 393.7 402 53.2
SMO329G0078 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 1.5e-103 380.6 362 51.9
Pp3c17_18550 Physcomitrium patens HOM05D003650 ORTHO05D004213 7.6e-103 378.3 362 49.4
Pp3c14_20380 Physcomitrium patens HOM05D003650 ORTHO05D004213 7.1e-101 371.7 362 49.4
Gohir.D09G118300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 1.4e-93 347.4 179 86.6
SMO165G0114 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 1.0e-91 341.3 270 59.3
CDE11G0987 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 2.2e-81 307.0 269 56.1
Sed0014161 Sechium edule HOM05D003650 ORTHO05D004213 2.6e-71 273.5 310 48.1
Actinidia02535 Actinidia chinensis HOM05D003650 ORTHO05D004213 2.8e-65 253.4 254 51.6
CARHR167370 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.3e-54 218.0 116 84.5
Os05g0391200 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 3.5e-39 166.8 90 80.0
GSVIVG01032164001 Vitis vinifera HOM05D003650 ORTHO05D004213 1.4e-32 144.8 77 83.1
Cre06.g260650 Chlamydomonas reinhardtii HOM05D003650 ORTHO05D004213 2.4e-24 117.5 301 27.6
Rhsim03G0147000 Rhododendron simsii HOM05D003650 ORTHO05D004213 1.2e-20 105.1 127 46.5
Cre18.g748697 Chlamydomonas reinhardtii HOM05D003650 ORTHO05D004213 2.2e-17 94.4 239 29.7
RhsimUnG0102900 Rhododendron simsii HOM05D002707 ORTHO05D002925 2.9e-17 94.0 57 75.4
Actinidia33702 Actinidia chinensis HOM05D003650 ORTHO05D004213 2.4e-16 90.9 98 45.9
CDE06G0299 Ceratophyllum demersum HOM05D000016 ORTHO05D000487 2.7e-15 87.4 43 79.1
CANSAT80G0982 Cannabis sativa HOM05D003650 ORTHO05D017730 2.4e-11 74.3 93 47.3


User provided reference genes

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