Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 5.4e-30 133.7 67 100.0
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 5.4e-30 133.7 67 100.0
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 3.9e-28 127.5 64 98.4
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 8.7e-20 99.8 72 72.2
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.5e-19 99.0 72 70.8
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.9e-19 98.6 72 70.8
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.3e-19 97.8 72 72.2
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.3e-19 97.8 72 72.2
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 3.3e-19 97.8 72 72.2
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.3e-19 97.8 72 72.2
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.3e-19 97.8 72 72.2
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.3e-19 97.8 72 72.2
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 7.4e-19 96.7 72 69.4
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.6e-19 96.3 72 69.4
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.3e-18 95.9 72 70.8
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.3e-18 95.9 72 66.7
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-18 95.5 72 68.1
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-18 95.5 72 68.1
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.6e-18 95.5 72 68.1
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.6e-18 95.5 72 68.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 2.1e-18 95.1 77 59.7
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 2.1e-18 95.1 76 60.5
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.8e-18 94.7 77 59.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.8e-18 94.7 72 68.1
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 2.8e-18 94.7 72 68.1
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.8e-18 94.7 77 59.7
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 3.6e-18 94.4 77 59.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.6e-18 94.4 76 57.9
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 4.8e-18 94.0 77 58.4
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 6.2e-18 93.6 77 59.7
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.2e-18 93.6 77 58.4
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 6.2e-18 93.6 77 58.4
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 6.2e-18 93.6 77 58.4
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 6.2e-18 93.6 77 58.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 8.1e-18 93.2 77 59.7
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.1e-17 92.8 77 61.0
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.1e-17 92.8 77 58.4
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.1e-17 92.8 63 79.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.1e-17 92.8 72 63.9
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-17 92.8 70 67.1
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.1e-17 92.8 77 58.4
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-17 92.8 72 65.3
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.4e-17 92.4 72 62.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.4e-17 92.4 77 57.1
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.4e-17 92.4 72 65.3
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.4e-17 92.4 70 67.1
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.8e-17 92.0 72 61.1
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.8e-17 92.0 77 57.1
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.8e-17 92.0 77 58.4
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.8e-17 92.0 72 66.7
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.8e-17 92.0 76 57.9
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.4e-17 91.7 72 65.3
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.4e-17 91.7 72 61.1
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.4e-17 91.7 77 55.8
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.4e-17 91.7 77 57.1
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.1e-17 91.3 77 58.4
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 3.1e-17 91.3 77 57.1
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.1e-17 91.3 77 57.1
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.1e-17 91.3 77 57.1
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 3.1e-17 91.3 77 57.1
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 3.1e-17 91.3 77 58.4
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.1e-17 91.3 76 57.9
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.1e-17 91.3 76 57.9
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 4.0e-17 90.9 72 63.9
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.0e-17 90.9 77 58.4
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 5.3e-17 90.5 77 55.8
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 5.3e-17 90.5 76 56.6
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.9e-17 90.1 77 57.1
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 6.9e-17 90.1 77 57.1
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 6.9e-17 90.1 77 57.1
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 6.9e-17 90.1 77 57.1
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 6.9e-17 90.1 72 65.3
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 6.9e-17 90.1 72 59.7
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 6.9e-17 90.1 77 57.1
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 9.0e-17 89.7 72 59.7
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 9.0e-17 89.7 77 55.8
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 9.0e-17 89.7 77 57.1
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 9.0e-17 89.7 76 56.6
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 9.0e-17 89.7 76 56.6
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 9.0e-17 89.7 76 57.9
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 9.0e-17 89.7 77 55.8
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 9.0e-17 89.7 77 57.1
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 9.0e-17 89.7 77 57.1
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.2e-16 89.4 70 61.4
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.2e-16 89.4 71 60.6
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-16 89.4 77 55.8
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.2e-16 89.4 77 58.4
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.5e-16 89.0 77 55.8
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-16 89.0 53 83.0
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.5e-16 89.0 72 63.9
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.5e-16 89.0 76 55.3
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.5e-16 89.0 71 60.6
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.5e-16 89.0 77 58.4
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 2.0e-16 88.6 77 55.8
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.6e-16 88.2 70 61.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.6e-16 88.2 77 55.8
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.6e-16 88.2 77 54.5
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.6e-16 88.2 78 57.7
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.6e-16 88.2 76 56.6
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.4e-16 87.8 72 61.1
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.4e-16 87.8 72 59.7
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 5.8e-16 87.0 75 56.0
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 7.6e-16 86.7 77 51.9
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 9.9e-16 86.3 72 59.7
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.9e-16 86.3 72 58.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.3e-15 85.9 72 58.3
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.3e-15 85.9 72 54.2
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.3e-15 85.9 77 57.1
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.3e-15 85.9 72 58.3
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.3e-15 85.9 72 58.3
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.3e-15 85.9 72 58.3
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.2e-15 85.1 71 56.3
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.9e-15 84.7 75 54.7
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.9e-15 84.7 72 56.9
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.9e-15 84.7 77 53.2
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 3.8e-15 84.3 75 56.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 3.8e-15 84.3 76 53.9
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.1e-14 82.8 105 42.9
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 3.2e-14 81.3 67 58.2
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 3.2e-14 81.3 101 43.6
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.2e-14 80.9 77 54.5
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 4.2e-14 80.9 76 51.3
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 5.5e-14 80.5 76 53.9
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 9.3e-14 79.7 72 58.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.2e-13 79.3 75 50.7
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.6e-13 79.0 76 52.6
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 4.6e-13 77.4 75 56.0
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 4.6e-13 77.4 75 49.3
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.3e-12 75.1 72 54.2
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 5.1e-12 73.9 117 36.8
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 8.7e-12 73.2 75 48.0
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.1e-11 72.8 122 34.4
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.1e-11 72.8 71 53.5
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.1e-11 72.8 73 53.4
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-11 71.6 62 61.3
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-11 71.6 62 61.3
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.5e-11 71.6 71 52.1
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 5.8e-08 60.5 38 68.4
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 7.6e-08 60.1 43 60.5
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.3e-07 59.3 43 60.5
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.3e-07 59.3 43 58.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.3e-07 59.3 43 58.1
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.9e-07 58.2 43 62.8
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.8e-07 57.8 38 71.1
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 6.5e-07 57.0 38 68.4
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 6.5e-07 57.0 38 63.2
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.4e-07 56.6 43 58.1
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.4e-07 56.6 40 65.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 8.4e-07 56.6 38 65.8
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.4e-06 55.8 63 42.9
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 3.2e-06 54.7 43 53.5
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.2e-06 54.3 38 63.2


User provided reference genes

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