Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06196 Brassica carinata HOM05D002563 ORTHO05D008422 3.0e-34 147.9 72 100.0
A10p05560 Brassica napus HOM05D002563 ORTHO05D008422 1.9e-17 92.0 57 75.4
BcaC05g24667 Brassica carinata HOM05D002563 ORTHO05D008422 2.5e-17 91.7 57 75.4
C05p05110 Brassica napus HOM05D002563 ORTHO05D008422 3.3e-17 91.3 54 77.8
BcaB02g06775 Brassica carinata HOM05D002563 ORTHO05D008422 5.7e-17 90.5 54 77.8
CARHR006700 Cardamine hirsuta HOM05D002563 ORTHO05D008422 3.7e-16 87.8 57 71.9
AL1G17070 Arabidopsis lyrata HOM05D002563 ORTHO05D008422 4.8e-16 87.4 54 74.1
AT1G07010 Arabidopsis thaliana HOM05D002563 ORTHO05D008422 4.8e-16 87.4 54 74.1
Carub.0001s0630 Capsella rubella HOM05D002563 ORTHO05D008422 6.3e-16 87.0 57 71.9
Thhalv10009773m.g Eutrema salsugineum HOM05D002563 ORTHO05D008422 3.1e-15 84.7 58 70.7
Aa31LG1G8060 Aethionema arabicum HOM05D002563 ORTHO05D008422 6.9e-15 83.6 54 70.4
FAN21G1037 Fragaria x ananassa HOM05D002563 ORTHO05D008422 1.5e-14 82.4 58 63.8
FAN21G1383 Fragaria x ananassa HOM05D002563 ORTHO05D008422 1.5e-14 82.4 58 63.8
Migut.D00849 Erythranthe guttata HOM05D002563 ORTHO05D008422 2.0e-14 82.0 58 63.8
Sp1g05730 Schrenkiella parvula HOM05D002563 ORTHO05D008422 2.6e-14 81.6 58 69.0
FAN25G2495 Fragaria x ananassa HOM05D002563 ORTHO05D008422 5.9e-14 80.5 60 61.7
FAN11G3709 Fragaria x ananassa HOM05D002563 ORTHO05D008422 1.7e-13 79.0 60 60.0
FAN16G2606 Fragaria x ananassa HOM05D002563 ORTHO05D008422 1.7e-13 79.0 60 60.0
FvH4_3g39710 Fragaria vesca HOM05D002563 ORTHO05D008422 2.2e-13 78.6 54 64.8
MD11G1056900 Malus domestica HOM05D002563 ORTHO05D008422 3.8e-13 77.8 54 63.0
RcHm_v2.0_Chr5g0071581 Rosa chinensis HOM05D002563 ORTHO05D008422 3.8e-13 77.8 54 64.8
THA.LOC104800768 Tarenaya hassleriana HOM05D002563 ORTHO05D008422 5.0e-13 77.4 55 63.6
Peaxi162Scf00390g00724 Petunia axillaris HOM05D002563 ORTHO05D008422 8.5e-13 76.6 52 61.5
Cpa.g.sc2.360 Carica papaya HOM05D002563 ORTHO05D008422 1.1e-12 76.3 54 59.3
Dinv28695 Davidia involucrata HOM05D002563 ORTHO05D008422 1.4e-12 75.9 54 61.1
Prupe.6G048800 Prunus persica HOM05D002563 ORTHO05D008422 1.4e-12 75.9 56 64.3
Nitab4.5_0007880g0070 Nicotiana tabacum HOM05D002563 ORTHO05D008422 2.5e-12 75.1 54 63.0
Nitab4.5_0013425g0010 Nicotiana tabacum HOM05D002563 ORTHO05D008422 2.5e-12 75.1 54 63.0
EL10Ac7g15915 Beta vulgaris HOM05D002563 ORTHO05D008422 3.2e-12 74.7 54 59.3
CiPaw.13G069700 Carya illinoinensis HOM05D002563 ORTHO05D008422 4.2e-12 74.3 54 61.1
Hund29015 Selenicereus undatus HOM05D002563 ORTHO05D008422 4.2e-12 74.3 54 61.1
Solyc06g082280.3 Solanum lycopersicum HOM05D002563 ORTHO05D008422 4.2e-12 74.3 54 59.3
PGSC0003DMG400030377 Solanum tuberosum HOM05D002563 ORTHO05D008422 4.2e-12 74.3 54 57.4
TAR623G0598 Trochodendron aralioides HOM05D002563 ORTHO05D008422 5.5e-12 73.9 56 64.3
Nn2g11002 Nelumbo nucifera HOM05D002563 ORTHO05D008422 7.2e-12 73.6 56 60.7
Duzib168G1120 Durio zibethinus HOM05D002563 ORTHO05D008422 9.4e-12 73.2 54 57.4
CANSAT54G2788 Cannabis sativa HOM05D002563 ORTHO05D008422 1.2e-11 72.8 58 53.4
HanXRQChr01g0012171 Helianthus annuus HOM05D002563 ORTHO05D008422 1.2e-11 72.8 54 55.6
Oeu025051.1 Olea europaea HOM05D002563 ORTHO05D008422 1.6e-11 72.4 54 59.3
Sopen06g033660 Solanum pennellii HOM05D002563 ORTHO05D008422 1.6e-11 72.4 54 57.4
Eucgr.B04000 Eucalyptus grandis HOM05D002563 ORTHO05D008422 2.7e-11 71.6 54 59.3
PGR102G1165 Punica granatum HOM05D002563 ORTHO05D008422 2.7e-11 71.6 58 51.7
CSS0036604 Camellia sinensis var. sinensis HOM05D002563 ORTHO05D008422 3.6e-11 71.2 54 59.3
QL01p026431 Quercus lobata HOM05D002563 ORTHO05D008422 3.6e-11 71.2 54 57.4
HanXRQChr12g0371461 Helianthus annuus HOM05D002563 ORTHO05D008422 4.6e-11 70.9 60 51.7
SGA_v2.0_scaffold20G09295 Striga asiatica HOM05D002563 ORTHO05D008422 4.6e-11 70.9 58 58.6
CAN.G1095.22 Capsicum annuum HOM05D002563 ORTHO05D008422 6.1e-11 70.5 54 51.9
Ciclev10028625m.g Citrus clementina HOM05D002563 ORTHO05D008422 6.1e-11 70.5 54 57.4
COL.COLO4_11148 Corchorus olitorius HOM05D002563 ORTHO05D008422 6.1e-11 70.5 54 55.6
Rhsim13G0064600 Rhododendron simsii HOM05D002563 ORTHO05D008422 6.1e-11 70.5 54 57.4
Atru.BG.123.p Acer truncatum HOM05D002563 ORTHO05D008422 7.9e-11 70.1 54 59.3
Glyma.14G198700 Glycine max HOM05D002563 ORTHO05D008422 7.9e-11 70.1 51 60.8
AUR62009674 Chenopodium quinoa HOM05D002563 ORTHO05D008422 1.0e-10 69.7 56 60.7
MSTRG.21237 Avicennia marina HOM05D002563 ORTHO05D008422 1.4e-10 69.3 54 59.3
TWI31G1024 Tripterygium wilfordii HOM05D002563 ORTHO05D008422 1.8e-10 68.9 53 56.6
VMungo0647G2159 Vigna mungo HOM05D002563 ORTHO05D008422 1.8e-10 68.9 51 58.8
Cc01_g14820 Coffea canephora HOM05D002563 ORTHO05D008422 2.3e-10 68.6 54 59.3
Lsat_1_v5_gn_5_174641 Lactuca sativa HOM05D002563 ORTHO05D008422 3.0e-10 68.2 54 55.6
unitig_0.g2143 Utricularia gibba HOM05D002563 ORTHO05D008422 3.0e-10 68.2 56 57.1
GSVIVG01024637001 Vitis vinifera HOM05D002563 ORTHO05D008422 3.0e-10 68.2 55 63.6
BcaC04g20409 Brassica carinata HOM05D002563 ORTHO05D008422 3.9e-10 67.8 54 63.0
BolC5t29282H Brassica oleracea HOM05D002563 ORTHO05D008422 3.9e-10 67.8 39 82.1
Actinidia23200 Actinidia chinensis HOM05D002563 ORTHO05D008422 5.1e-10 67.4 54 59.3
Gohir.A13G234800 Gossypium hirsutum HOM05D002563 ORTHO05D008422 5.1e-10 67.4 54 53.7
Gohir.D13G240500 Gossypium hirsutum HOM05D002563 ORTHO05D008422 5.1e-10 67.4 54 53.7
Psat2g053720 Pisum sativum HOM05D002563 ORTHO05D008422 5.1e-10 67.4 54 53.7
Aqoxy1G01294 Aquilegia oxysepala HOM05D002563 ORTHO05D008422 6.7e-10 67.0 57 56.1
ECA248G2589 Erigeron canadensis HOM05D002563 ORTHO05D008422 6.7e-10 67.0 54 51.9
PSO765G0005 Papaver somniferum HOM05D002563 ORTHO05D008422 6.7e-10 67.0 52 57.7
Potri.009G077900 Populus trichocarpa HOM05D002563 ORTHO05D008422 6.7e-10 67.0 54 55.6
DCAR_018229 Daucus carota HOM05D002563 ORTHO05D008422 8.8e-10 66.6 54 50.0
Gorai.013G271300 Gossypium raimondii HOM05D002563 ORTHO05D008422 8.8e-10 66.6 54 53.7
Lalb_Chr04g0251991 Lupinus albus HOM05D002563 ORTHO05D008422 8.8e-10 66.6 58 55.2
Glyma.02G231100 Glycine max HOM05D002563 ORTHO05D008422 1.1e-09 66.2 51 58.8
arahy.Tifrunner.gnm1.ann1.FHS7BK Arachis hypogaea HOM05D002563 ORTHO05D008422 1.5e-09 65.9 51 54.9
Lj2A1092G52 Lonicera japonica HOM05D002563 ORTHO05D008422 1.5e-09 65.9 54 53.7
arahy.Tifrunner.gnm1.ann1.R8SLY5 Arachis hypogaea HOM05D002563 ORTHO05D008422 2.0e-09 65.5 51 54.9
TPR.G29139 Trifolium pratense HOM05D002563 ORTHO05D008422 2.0e-09 65.5 50 56.0
LjContig00141g0005241 Lotus japonicus HOM05D002563 ORTHO05D008422 2.5e-09 65.1 51 56.9
Medtr5g072900 Medicago truncatula HOM05D002563 ORTHO05D008422 2.5e-09 65.1 51 54.9
PSO349G0182 Papaver somniferum HOM05D002563 ORTHO05D008422 2.5e-09 65.1 52 55.8
Sc12g0002000 Simmondsia chinensis HOM05D002563 ORTHO05D008422 2.5e-09 65.1 54 51.9
Thecc.09G357200 Theobroma cacao HOM05D002563 ORTHO05D008422 2.5e-09 65.1 54 53.7
Ca_05647_v3 Cicer arietinum L. HOM05D002563 ORTHO05D008422 1.3e-08 62.8 50 52.0
Manes.18G127800 Manihot esculenta HOM05D002563 ORTHO05D008422 1.3e-08 62.8 51 52.9
ATR0594G062 Amborella trichopoda HOM05D002563 ORTHO05D008422 2.2e-08 62.0 48 52.1
Phvul.008G256500 Phaseolus vulgaris HOM05D002563 ORTHO05D008422 2.2e-08 62.0 51 52.9
Sed0022573 Sechium edule HOM05D002563 ORTHO05D008422 2.2e-08 62.0 55 52.7
Sabra09G0059500 Salix brachista HOM05D002563 ORTHO05D008422 3.7e-08 61.2 55 50.9
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 4.8e-08 60.8 42 64.3
Haze_24408 Corylus avellana HOM05D002563 ORTHO05D008422 8.2e-08 60.1 43 62.8
Zm00001eb048700 Zea mays HOM05D002563 ORTHO05D008422 8.2e-08 60.1 52 53.8
CDE04G2686 Ceratophyllum demersum HOM05D002563 ORTHO05D008422 1.1e-07 59.7 50 58.0
MELO3C020515.2 Cucumis melo HOM05D002563 ORTHO05D008422 1.4e-07 59.3 51 54.9
CsaV3_1G036530 Cucumis sativus L. HOM05D002563 ORTHO05D008422 4.1e-07 57.8 51 52.9
Pp3c16_8100 Physcomitrium patens HOM05D002563 ORTHO05D008422 5.3e-07 57.4 52 51.9
Pp3c16_8111 Physcomitrium patens HOM05D002563 ORTHO05D008422 5.3e-07 57.4 52 51.9
AagrBONN_evm.TU.Sc2ySwM_228.874 Anthoceros agrestis HOM05D002563 ORTHO05D008422 1.2e-06 56.2 50 54.0
Pp3c25_5070 Physcomitrium patens HOM05D002563 ORTHO05D008422 1.2e-06 56.2 48 54.2
BraA10t42817Z Brassica rapa HOM05D002563 ORTHO05D008422 1.5e-06 55.8 30 83.3
Mapoly0009s0052 Marchantia polymorpha HOM05D002563 ORTHO05D008422 3.4e-06 54.7 49 51.0


User provided reference genes

Program Settings