Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 3.3e-104 381.7 195 100.0
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 9.4e-91 337.0 187 93.0
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 2.2e-84 315.8 187 84.0
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 2.9e-84 315.5 187 84.5
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 3.0e-81 305.4 187 84.5
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 1.2e-80 303.5 187 83.4
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 2.4e-78 295.8 187 79.7
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 2.5e-75 285.8 187 77.0
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 2.5e-75 285.8 187 76.5
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 2.8e-74 282.3 187 77.5
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 1.8e-73 279.6 187 75.9
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 4.0e-73 278.5 180 77.2
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 5.7e-72 274.6 191 72.8
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 2.2e-71 272.7 187 71.1
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 1.7e-52 209.9 180 58.3
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.9e-52 208.8 187 58.3
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 3.9e-52 208.8 187 56.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 3.9e-52 208.8 187 56.7
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 9.5e-51 204.1 187 55.1
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 6.2e-50 201.4 187 56.7
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.1e-49 200.7 187 55.6
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 2.3e-49 199.5 190 54.2
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.2e-48 197.2 187 56.1
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.0e-48 196.4 187 58.3
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 9.9e-48 194.1 187 58.8
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.3e-47 193.7 188 53.2
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 2.9e-47 192.6 181 54.7
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 4.9e-47 191.8 187 54.0
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 6.4e-47 191.4 187 53.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 8.3e-47 191.0 187 54.0
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 8.3e-47 191.0 187 56.7
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.1e-46 190.7 185 55.7
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.4e-46 190.3 218 47.7
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.9e-46 189.9 187 53.5
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 4.1e-46 188.7 218 47.2
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 9.2e-46 187.6 189 52.4
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.2e-45 187.2 187 51.3
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 4.6e-45 185.3 189 54.0
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 2.3e-44 183.0 187 56.1
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 8.6e-44 181.0 187 50.3
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.5e-43 180.3 181 55.2
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 1.5e-43 180.3 187 49.7
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.5e-43 180.3 187 51.3
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.9e-43 179.9 181 54.7
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.9e-43 179.9 181 54.1
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 3.3e-43 179.1 181 54.1
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 4.3e-43 178.7 181 52.5
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 1.6e-42 176.8 181 54.1
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 2.1e-42 176.4 187 50.8
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 2.1e-42 176.4 181 53.6
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 3.6e-42 175.6 187 50.3
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.7e-42 175.3 187 51.3
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 4.7e-42 175.3 187 50.8
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 4.7e-42 175.3 187 49.2
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.1e-42 174.5 188 50.5
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 8.1e-42 174.5 187 49.2
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.1e-41 174.1 187 50.3
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.4e-41 173.7 180 53.9
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 2.4e-41 172.9 180 49.4
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 3.1e-41 172.6 187 49.2
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 3.1e-41 172.6 181 49.2
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 3.1e-41 172.6 187 50.3
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.0e-41 172.2 181 54.1
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.2e-41 171.8 188 49.5
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.8e-41 171.4 188 49.5
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 8.9e-41 171.0 187 50.8
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 4.4e-40 168.7 187 48.1
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 7.6e-40 167.9 187 47.1
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 1.7e-39 166.8 187 45.5
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.2e-39 166.4 188 46.8
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.2e-39 166.4 188 46.8
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 2.2e-39 166.4 188 46.8
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 4.9e-39 165.2 188 46.8
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.9e-38 163.3 187 49.2
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.2e-38 162.5 188 46.8
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 9.2e-38 161.0 181 48.6
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 3.5e-37 159.1 188 48.9
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.0e-36 157.5 181 46.4
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 3.9e-36 155.6 188 45.7
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.9e-36 155.6 181 46.4
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 5.1e-36 155.2 187 44.4
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 5.1e-36 155.2 187 43.3
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.9e-35 153.3 177 46.9
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.5e-35 152.9 182 48.4
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 3.3e-35 152.5 187 44.4
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 5.6e-35 151.8 173 49.7
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 7.3e-35 151.4 187 46.5
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 9.6e-35 151.0 180 47.8
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.2e-34 150.6 187 44.9
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-34 150.2 187 46.5
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.1e-34 149.8 187 42.8
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.8e-34 149.4 187 46.0
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 4.7e-34 148.7 187 46.0
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 6.2e-34 148.3 187 44.9
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 8.1e-34 147.9 187 44.9
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 4.0e-33 145.6 187 44.4
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 4.0e-33 145.6 174 48.9
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 4.0e-33 145.6 184 43.5
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 5.2e-33 145.2 157 47.8
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 5.8e-32 141.7 187 43.3
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 5.8e-32 141.7 187 43.3
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 7.6e-32 141.4 187 44.9
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.7e-31 140.2 173 47.4
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.6e-29 133.7 132 49.2
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 2.1e-29 133.3 172 41.3
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 4.3e-27 125.6 187 40.6
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 7.3e-27 124.8 187 38.5
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 1.3e-20 104.0 184 34.2
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 3.7e-18 95.9 210 30.0
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 3.1e-17 92.8 181 33.1
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.0e-16 90.1 98 48.0
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.2e-15 86.7 101 45.5
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.1e-14 84.3 190 33.7
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.4e-14 84.0 106 44.3
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 2.1e-13 80.1 174 32.8
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.0e-13 78.6 89 49.4
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 1.5e-08 63.9 45 60.0


User provided reference genes

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