Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 0.0e+00 4368.9 2251 100.0
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 0.0e+00 1980.7 1126 90.1
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 0.0e+00 1971.8 1125 89.9
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 0.0e+00 1921.0 1129 87.2
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 0.0e+00 1844.3 1129 84.4
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 0.0e+00 1766.5 1145 79.5
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 0.0e+00 1764.2 1138 79.7
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 0.0e+00 1756.5 1138 79.0
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 0.0e+00 1752.6 1141 79.5
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 0.0e+00 1724.5 1138 77.8
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 0.0e+00 1709.1 1140 77.6
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 0.0e+00 1432.5 1142 65.6
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 2.5e-256 890.6 1142 44.1
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 7.7e-245 852.4 1160 42.8
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 1.6e-242 844.7 1163 42.6
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 4.2e-235 820.1 1162 42.0
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 9.4e-235 818.9 1162 42.2
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.4e-225 788.5 1178 40.7
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 4.0e-225 786.9 1156 41.1
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 9.8e-224 782.3 1179 40.3
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 9.1e-222 775.8 1158 40.1
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 9.8e-216 755.7 1175 40.9
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 5.4e-214 750.0 1165 38.8
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 5.0e-212 743.4 1165 39.2
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 2.8e-210 737.6 1149 39.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.0e-209 735.7 1168 38.7
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.4e-209 735.3 1153 38.7
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.3e-204 718.8 1185 37.9
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 6.6e-204 716.5 1187 37.8
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 1.2e-202 712.2 1137 39.6
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 9.8e-200 702.6 1168 38.2
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 2.2e-199 701.4 1159 38.1
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 3.7e-199 700.7 1146 39.4
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 4.6e-197 693.7 1150 37.6
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 7.8e-197 693.0 1179 36.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.8e-197 693.0 1200 38.0
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-194 685.3 1155 38.8
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 5.8e-192 676.8 1166 37.9
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 9.9e-192 676.0 1163 37.7
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.7e-189 667.9 1155 36.7
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.7e-188 665.2 1172 37.7
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.6e-187 660.2 1171 36.0
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 8.1e-186 656.4 1187 35.5
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 5.8e-184 650.2 1086 36.8
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.7e-183 648.7 1158 35.8
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 8.4e-183 646.4 1160 35.9
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.9e-182 645.2 1145 36.7
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.2e-181 642.5 1148 37.5
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 6.0e-181 640.2 1102 37.9
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.0e-180 639.4 978 40.3
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 2.4e-177 628.2 1177 36.4
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 9.0e-177 626.3 1140 37.6
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 5.4e-174 617.1 1149 35.6
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 2.7e-173 614.8 1160 36.1
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.9e-173 613.2 1151 35.3
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 5.1e-172 610.5 1258 34.6
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.3e-170 605.9 1141 36.2
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.4e-169 601.7 1176 34.2
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.2e-165 589.3 1175 34.0
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 7.9e-165 586.6 1125 35.6
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.0e-164 586.3 1168 33.6
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.9e-163 582.0 1170 33.6
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.9e-163 582.0 1170 33.6
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.9e-163 582.0 1170 33.8
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 4.0e-161 574.3 1035 35.7
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.2e-160 572.8 1159 33.2
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 2.6e-160 571.6 942 38.7
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.6e-160 571.6 1161 34.0
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 5.8e-160 570.5 1163 34.0
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 1.1e-158 566.2 1147 33.5
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 7.1e-158 563.5 1178 32.9
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 7.9e-157 560.1 1006 37.1
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.3e-156 558.5 1160 32.5
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 4.3e-155 554.3 1174 33.3
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 5.7e-155 553.9 1162 32.5
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 2.1e-154 552.0 1156 31.9
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.8e-154 551.6 1154 32.7
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 6.3e-154 550.4 908 37.9
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.5e-152 545.8 1175 33.6
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 2.8e-146 525.0 1180 32.4
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.4e-145 522.7 1093 34.2
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.8e-145 522.3 1163 32.3
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 7.7e-144 516.9 1207 32.3
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.3e-143 516.2 1172 32.6
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 3.0e-140 505.0 1160 31.0
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.1e-137 496.5 381 71.4
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.4e-137 496.1 1142 32.4
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 3.6e-133 481.5 1218 30.5
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.8e-129 469.2 973 32.8
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.2e-128 466.5 1128 32.2
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 1.8e-121 442.6 1264 27.9
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.0e-119 436.8 958 33.2
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.2e-119 435.6 918 31.8
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 8.8e-108 397.1 1252 26.7
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.2e-101 376.7 668 37.0
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.7e-98 366.3 877 31.7
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 2.0e-91 342.8 890 28.8
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 4.9e-90 338.2 187 93.0
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 5.2e-76 291.6 311 51.8
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 7.6e-75 287.7 1273 25.4
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 3.8e-74 285.4 791 28.8
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 4.9e-74 285.0 311 51.1
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 1.0e-71 277.3 321 47.7
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 1.3e-71 276.9 330 45.8
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.1e-70 273.9 309 48.2
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.6e-70 271.6 309 48.5
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 2.4e-68 266.2 309 55.7
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.3e-66 260.4 426 37.8
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 1.8e-55 223.4 434 34.8
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 6.7e-55 221.5 175 61.1
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 1.1e-52 214.2 304 40.5
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.0e-51 209.9 244 52.9
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.3e-50 207.2 270 45.6
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 2.2e-50 206.5 304 39.5
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 3.8e-50 205.7 1155 22.7
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 2.4e-49 203.0 135 77.8
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.6e-48 200.3 413 33.9
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 3.9e-47 195.7 178 55.6
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.5e-46 193.7 237 43.9
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 3.3e-46 192.6 176 57.4
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 6.2e-45 188.3 287 39.7
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.8e-44 186.8 175 56.6
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 2.2e-42 179.9 175 50.9
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 9.6e-38 164.5 168 52.4
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.2e-35 157.5 996 22.5
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 6.5e-34 151.8 128 69.5
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 4.8e-29 135.6 245 33.9
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.8e-28 133.7 190 46.8
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.1e-28 132.5 492 25.8
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 2.0e-27 130.2 79 82.3
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 3.4e-27 129.4 78 83.3
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.0e-26 127.9 133 49.6
C03p82740 Brassica napus HOM05D050026 ORTHO05D041081 4.6e-24 119.0 429 29.8
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 5.1e-23 115.5 290 27.2
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 8.8e-23 114.8 230 32.6
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 8.8e-23 114.8 301 29.6
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.7e-18 100.5 361 24.1
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 2.2e-18 100.1 98 56.1
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.0e-18 99.0 413 26.2
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.1e-17 97.8 97 55.7
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.0e-15 91.3 98 50.0
BolC3t20556H Brassica oleracea HOM05D050026 ORTHO05D041081 3.0e-15 89.7 272 30.5
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.6e-14 86.7 101 45.5
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 7.4e-14 85.1 216 26.4
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.7e-13 84.0 106 44.3
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 7.0e-12 78.6 89 49.4
BolC3t20555H Brassica oleracea HOM05D004959 ORTHO05D005961 3.8e-10 72.8 81 45.7
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 6.7e-07 62.0 90 42.2


User provided reference genes

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