Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-125 453.0 224 100.0
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 2.0e-89 332.8 167 100.0
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.5e-87 325.9 167 97.6
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 3.3e-87 325.5 167 97.0
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.3e-87 325.5 167 97.0
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.1e-86 322.8 167 97.0
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 8.6e-80 300.8 163 91.4
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.8e-77 293.1 164 90.2
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 1.8e-77 293.1 164 90.2
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 3.1e-77 292.4 167 88.0
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 3.4e-76 288.9 167 86.8
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 3.2e-74 282.3 167 84.4
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.0e-72 277.3 165 83.0
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.0e-72 275.8 167 82.0
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 3.9e-72 275.4 167 80.8
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 5.8e-68 261.5 168 76.8
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 3.3e-63 245.7 132 92.4
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 3.6e-62 242.3 162 72.8
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 4.7e-62 241.9 165 75.2
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 6.2e-62 241.5 162 71.0
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.4e-61 240.4 162 72.8
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 6.8e-61 238.0 162 71.6
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 9.9e-60 234.2 162 69.8
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 1.7e-59 233.4 162 67.3
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.7e-59 233.4 162 72.2
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 1.7e-59 233.4 162 72.2
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 4.9e-59 231.9 162 70.4
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 8.4e-59 231.1 162 67.3
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.1e-58 230.7 167 66.5
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.4e-58 230.3 162 67.9
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.4e-58 230.3 162 67.9
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 1.9e-58 229.9 162 67.3
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 3.2e-58 229.2 162 69.8
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 5.4e-58 228.4 162 66.0
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 7.1e-58 228.0 162 67.9
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.1e-57 226.5 171 66.1
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.5e-57 225.7 162 67.3
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.0e-56 224.2 162 64.2
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.3e-56 223.8 163 66.3
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.7e-56 223.4 162 66.0
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.3e-56 223.0 170 63.5
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 3.0e-56 222.6 162 65.4
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 6.6e-56 221.5 162 66.0
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 8.6e-56 221.1 163 65.6
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 8.6e-56 221.1 162 64.2
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.1e-55 220.7 162 66.7
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.1e-55 220.7 162 64.2
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.5e-55 220.3 162 67.3
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.5e-55 220.3 162 67.3
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.3e-55 218.8 162 65.4
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.6e-55 218.4 156 65.4
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 5.6e-55 218.4 162 64.8
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 7.3e-55 218.0 162 64.2
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 9.6e-55 217.6 160 66.2
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 9.6e-55 217.6 162 64.2
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.2e-54 217.2 162 64.8
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.6e-54 216.9 162 64.2
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.8e-54 216.1 162 66.0
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-53 214.2 162 64.8
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-53 214.2 162 64.8
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 4.0e-53 212.2 162 63.0
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.2e-53 211.8 148 67.6
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 8.9e-53 211.1 160 65.0
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.5e-52 210.3 174 62.6
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.5e-52 210.3 174 62.6
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.0e-52 209.9 162 64.8
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 3.4e-52 209.1 149 68.5
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 5.8e-52 208.4 162 62.3
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 7.6e-52 208.0 236 47.9
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.3e-51 207.2 162 61.1
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.3e-51 207.2 174 60.9
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 7.8e-49 198.0 144 67.4
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.0e-48 196.1 162 58.6
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 6.6e-48 194.9 145 66.9
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.1e-47 194.1 167 58.1
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 3.3e-47 192.6 207 51.2
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 5.6e-47 191.8 145 65.5
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 7.3e-47 191.4 153 60.8
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.3e-46 190.7 137 73.7
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.1e-45 186.0 163 55.8
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 4.0e-45 185.7 161 55.3
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 9.9e-44 181.0 174 55.2
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.1e-42 177.6 160 58.8
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.4e-42 177.2 133 62.4
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.4e-42 177.2 174 54.0
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.9e-42 176.8 158 59.5
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 7.1e-42 174.9 163 60.1
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 9.3e-42 174.5 121 72.7
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 3.5e-41 172.6 136 68.4
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.3e-40 170.6 151 55.6
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 6.6e-40 168.3 169 53.8
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.6e-40 168.3 196 48.5
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 6.2e-38 161.8 163 55.2
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 9.0e-37 157.9 148 52.7
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.4e-36 156.0 145 56.6
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.8e-36 155.2 145 56.6
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.4e-35 151.8 145 55.2
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 6.0e-33 145.2 160 48.8
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.8e-32 143.7 146 47.9
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 6.7e-32 141.7 106 66.0
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.6e-28 129.8 151 45.0
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.6e-28 129.8 151 45.0
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 3.4e-28 129.4 101 62.4
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.7e-27 127.1 162 41.4
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 6.5e-27 125.2 79 79.7
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.4e-26 124.0 96 58.3
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 4.2e-26 122.5 95 67.4
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 4.6e-25 119.0 162 42.0
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.0e-24 117.9 96 59.4
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.9e-24 115.9 160 40.0
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.1e-23 114.4 151 45.7
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.3e-22 110.9 83 66.3
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.8e-22 109.8 80 58.8
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.8e-22 109.8 74 71.6
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 3.7e-22 109.4 97 50.5
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.8e-22 109.0 69 76.8
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 3.1e-21 106.3 68 75.0
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.1e-21 106.3 81 70.4
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.1e-21 106.3 81 70.4
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 4.1e-21 105.9 155 41.9
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 5.3e-21 105.5 68 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.2e-20 104.4 154 39.0
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 4.5e-20 102.4 68 75.0
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.7e-17 93.2 67 70.1
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 2.7e-17 93.2 157 36.3
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.3e-16 90.1 102 45.1
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.6e-14 84.0 68 58.8
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 3.7e-14 82.8 52 76.9
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.4e-13 80.1 62 64.5
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 9.0e-13 78.2 50 78.0
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 2.6e-12 76.6 73 56.2
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.7e-09 66.6 170 28.2


User provided reference genes

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