Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06173 Brassica carinata HOM05D012012 ORTHO05D013530 9.0e-40 166.4 80 100.0
BcaC08g45942 Brassica carinata HOM05D012012 ORTHO05D013530 7.9e-28 126.7 83 78.3
C06p37370 Brassica napus HOM05D012012 ORTHO05D013530 7.9e-28 126.7 83 78.3
BraA07t30811Z Brassica rapa HOM05D012012 ORTHO05D013530 8.8e-27 123.2 77 74.0
BolC6t38839H Brassica oleracea HOM05D012012 ORTHO05D013530 1.1e-26 122.9 83 77.1
A07p31820 Brassica napus HOM05D012012 ORTHO05D013530 4.3e-26 120.9 74 79.7
BraA07t30809Z Brassica rapa HOM05D012012 ORTHO05D013530 4.3e-26 120.9 74 79.7
A07p31830 Brassica napus HOM05D012012 ORTHO05D013530 4.8e-25 117.5 80 72.5
C06p37390 Brassica napus HOM05D012012 ORTHO05D013530 2.4e-24 115.2 91 64.8
BolC6t38841H Brassica oleracea HOM05D012012 ORTHO05D013530 6.9e-24 113.6 91 63.7
BcaC08g45940 Brassica carinata HOM05D012012 ORTHO05D013530 2.0e-23 112.1 84 67.9
BraA03t11947Z Brassica rapa HOM05D012012 ORTHO05D013530 2.6e-23 111.7 81 72.8
Sp4g00800 Schrenkiella parvula HOM05D003095 ORTHO05D003517 2.6e-23 111.7 82 70.7
Thhalv10000397m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 1.4e-16 89.4 83 56.6
BcaB08g34990 Brassica carinata HOM05D003095 ORTHO05D003517 2.9e-14 81.6 48 72.9
A09p58070 Brassica napus HOM05D003095 ORTHO05D003517 5.0e-14 80.9 68 58.8
BraA09t41195Z Brassica rapa HOM05D003095 ORTHO05D003517 5.0e-14 80.9 68 58.8
BcaC07g41130 Brassica carinata HOM05D001159 ORTHO05D001712 8.5e-14 80.1 66 59.1
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 8.5e-14 80.1 66 59.1
C08p41320 Brassica napus HOM05D003095 ORTHO05D003517 1.9e-13 79.0 76 52.6
AT2G21640 Arabidopsis thaliana HOM05D003095 ORTHO05D003517 1.6e-12 75.9 82 47.6
C03p32890 Brassica napus HOM05D012012 ORTHO05D013530 3.0e-11 71.6 44 79.5
Carub.0004s0067 Capsella rubella HOM05D003095 ORTHO05D003517 4.0e-11 71.2 57 56.1
AL4G10840 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 5.2e-11 70.9 82 47.6
CARHR112630 Cardamine hirsuta HOM05D003095 ORTHO05D003517 1.7e-09 65.9 67 44.8
CSS0033942 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 2.2e-09 65.5 88 43.2
Gohir.A13G009200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 3.1e-08 61.6 76 46.1
PSO700G0195 Papaver somniferum HOM05D003095 ORTHO05D003517 7.0e-08 60.5 64 51.6
Gohir.D13G009900 Gossypium hirsutum HOM05D003095 ORTHO05D003517 1.6e-07 59.3 78 47.4
Gorai.013G010600 Gossypium raimondii HOM05D003095 ORTHO05D003517 2.0e-07 58.9 76 46.1
THA.LOC104804132 Tarenaya hassleriana HOM05D003095 ORTHO05D003517 3.5e-07 58.2 80 42.5
MD10G1075100 Malus domestica HOM05D003095 ORTHO05D003517 4.5e-07 57.8 81 43.2
arahy.Tifrunner.gnm1.ann1.86RK4S Arachis hypogaea HOM05D003095 ORTHO05D003517 5.9e-07 57.4 65 47.7
arahy.Tifrunner.gnm1.ann1.PX0JLD Arachis hypogaea HOM05D003095 ORTHO05D003517 7.7e-07 57.0 65 47.7
MBI05_g05282_MAGBIO Magnolia biondii HOM05D003095 ORTHO05D003517 7.7e-07 57.0 64 46.9
Aqoxy5G01623 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 1.0e-06 56.6 85 41.2
Ciclev10029652m.g Citrus clementina HOM05D003095 ORTHO05D003517 1.0e-06 56.6 65 47.7
Cc02_g17490 Coffea canephora HOM05D003095 ORTHO05D003517 1.0e-06 56.6 85 43.5
Glyma.06G309100 Glycine max HOM05D003095 ORTHO05D003517 1.0e-06 56.6 87 41.4
Duzib147G0559 Durio zibethinus HOM05D041241 ORTHO05D029106 1.3e-06 56.2 57 47.4
Gohir.A13G067200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 1.3e-06 56.2 65 46.2
Prupe.8G064900 Prunus persica HOM05D003095 ORTHO05D003517 1.3e-06 56.2 66 47.0
Eucgr.I01274 Eucalyptus grandis HOM05D003095 ORTHO05D003517 1.7e-06 55.8 65 44.6
Lalb_Chr25g0280921 Lupinus albus HOM05D003095 ORTHO05D003517 1.7e-06 55.8 89 40.4
Manes.17G101700 Manihot esculenta HOM05D003095 ORTHO05D003517 1.7e-06 55.8 82 39.0
arahy.Tifrunner.gnm1.ann1.RU14FQ Arachis hypogaea HOM05D003095 ORTHO05D003517 2.2e-06 55.5 83 39.8
Migut.L00519 Erythranthe guttata HOM05D052693 ORTHO05D013530 2.2e-06 55.5 62 46.8
Nitab4.5_0011729g0020 Nicotiana tabacum HOM05D003095 ORTHO05D003517 2.2e-06 55.5 87 37.9
Os03g0724500 Oryza sativa ssp. japonica HOM05D003095 ORTHO05D003517 2.2e-06 55.5 86 36.0
TWI31G0443 Tripterygium wilfordii HOM05D003095 ORTHO05D003517 2.2e-06 55.5 88 39.8
arahy.Tifrunner.gnm1.ann1.7U3W9V Arachis hypogaea HOM05D003095 ORTHO05D003517 2.9e-06 55.1 87 39.1
Gohir.D13G054400 Gossypium hirsutum HOM05D003095 ORTHO05D003517 2.9e-06 55.1 45 55.6
Gorai.013G061200 Gossypium raimondii HOM05D003095 ORTHO05D003517 2.9e-06 55.1 45 55.6
Medtr1g052680 Medicago truncatula HOM05D003095 ORTHO05D003517 2.9e-06 55.1 78 42.3
Os08g0204632 Oryza sativa ssp. japonica HOM05D003095 ORTHO05D003517 2.9e-06 55.1 66 40.9
PGR042G0984 Punica granatum HOM05D003095 ORTHO05D003517 2.9e-06 55.1 66 43.9
vmacro17487 Vaccinium macrocarpon HOM05D003095 ORTHO05D003517 2.9e-06 55.1 66 47.0
Dinv23514 Davidia involucrata HOM05D003095 ORTHO05D003517 3.8e-06 54.7 64 48.4
ECA236G4459 Erigeron canadensis HOM05D003095 ORTHO05D003517 3.8e-06 54.7 63 46.0
Peaxi162Scf00016g00073 Petunia axillaris HOM05D003095 ORTHO05D003517 3.8e-06 54.7 85 41.2
Potri.002G057100 Populus trichocarpa HOM05D003095 ORTHO05D003517 3.8e-06 54.7 76 40.8
Cc07_g09550 Coffea canephora HOM05D012012 ORTHO05D013530 5.0e-06 54.3 78 38.5
Glyma.02G157900 Glycine max HOM05D003095 ORTHO05D003517 5.0e-06 54.3 58 50.0
Solyc01g109680.3 Solanum lycopersicum HOM05D003095 ORTHO05D003517 5.0e-06 54.3 88 39.8
Sopen01g051870 Solanum pennellii HOM05D003095 ORTHO05D003517 5.0e-06 54.3 88 39.8
Cpa.g.sc62.158 Carica papaya HOM05D003095 ORTHO05D003517 6.5e-06 53.9 65 46.2
ECA234G3955 Erigeron canadensis HOM05D003095 ORTHO05D003517 6.5e-06 53.9 57 43.9
MD05G1065400 Malus domestica HOM05D003095 ORTHO05D003517 6.5e-06 53.9 83 41.0
Aqoxy1G01518 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 8.5e-06 53.5 87 36.8
Thhalv10026620m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 8.5e-06 53.5 80 41.2
FvH4_4g27401 Fragaria vesca HOM05D003095 ORTHO05D003517 8.5e-06 53.5 69 44.9
Nitab4.5_0002503g0080 Nicotiana tabacum HOM05D003095 ORTHO05D003517 8.5e-06 53.5 74 41.9
Nitab4.5_0003811g0120 Nicotiana tabacum HOM05D003095 ORTHO05D003517 8.5e-06 53.5 74 41.9
vmacro00179 Vaccinium macrocarpon HOM05D003095 ORTHO05D003517 8.5e-06 53.5 72 40.3
GSVIVG01031976001 Vitis vinifera HOM05D003095 ORTHO05D003517 8.5e-06 53.5 65 46.2
Zm00001eb055770 Zea mays HOM05D003095 ORTHO05D003517 8.5e-06 53.5 87 40.2


User provided reference genes

Program Settings