Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 9.2e-52 206.5 94 100.0
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 9.2e-52 206.5 94 100.0
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 5.3e-39 164.1 94 81.9
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 5.3e-39 164.1 94 81.9
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 6.9e-39 163.7 94 79.8
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 6.4e-37 157.1 95 80.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-36 155.2 95 77.9
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.4e-36 155.2 95 77.9
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.4e-36 155.2 94 77.7
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-36 154.8 95 77.9
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 3.2e-36 154.8 95 77.9
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 5.4e-36 154.1 94 78.7
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 5.4e-36 154.1 94 78.7
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 5.4e-36 154.1 94 78.7
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-35 152.5 96 74.0
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.6e-35 152.5 96 74.0
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 3.9e-34 147.9 94 71.3
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 3.9e-34 147.9 94 71.3
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 3.9e-34 147.9 94 71.3
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.2e-30 136.3 95 71.6
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.6e-30 135.2 96 70.8
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.6e-14 82.0 80 53.8
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 3.2e-12 75.1 78 51.3
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 3.2e-12 75.1 75 54.7
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 9.4e-12 73.6 88 48.9
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.0e-10 70.1 76 53.9
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 52.6
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.0e-10 68.6 76 52.6
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.0e-10 68.6 76 52.6
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 3.9e-10 68.2 76 53.9
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.9e-10 68.2 74 48.6
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.8e-10 67.0 76 51.3
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.8e-10 67.0 74 48.6
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.8e-10 67.0 76 51.3
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 8.8e-10 67.0 76 51.3
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 8.8e-10 67.0 74 48.6
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.1e-09 66.6 35 85.7
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.5e-09 65.5 71 47.9
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 2.5e-09 65.5 81 48.1
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.3e-09 64.7 66 48.5
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 4.3e-09 64.7 75 48.0
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 5.7e-09 64.3 55 56.4
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 7.4e-09 63.9 75 48.0
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 7.4e-09 63.9 77 48.1
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.3e-08 63.2 75 44.0
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.7e-08 62.8 75 48.0
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 2.8e-08 62.0 74 50.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 2.8e-08 62.0 72 44.4
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.7e-08 61.6 75 44.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.8e-08 61.2 73 47.9
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.8e-08 61.2 65 47.7
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.3e-08 60.8 73 49.3
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 8.2e-08 60.5 68 51.5
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 8.2e-08 60.5 55 52.7
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.4e-07 59.7 72 45.8
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 4.1e-07 58.2 70 41.4
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 5.3e-07 57.8 82 46.3
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 5.3e-07 57.8 82 46.3
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 5.3e-07 57.8 82 46.3
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 6.9e-07 57.4 84 40.5
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 6.9e-07 57.4 34 64.7
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 6.9e-07 57.4 34 64.7
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 6.9e-07 57.4 34 64.7
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.9e-07 57.4 77 41.6
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 9.1e-07 57.0 66 43.9
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 9.1e-07 57.0 63 46.0
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 1.2e-06 56.6 51 52.9
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.2e-06 56.6 82 45.1
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-06 56.2 24 95.8
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-06 56.2 68 48.5
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.5e-06 56.2 68 48.5
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.5e-06 56.2 68 48.5
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.5e-06 56.2 68 48.5
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.5e-06 56.2 68 48.5
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.5e-06 56.2 63 46.0
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 2.0e-06 55.8 42 64.3
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 2.0e-06 55.8 78 42.3
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 3.4e-06 55.1 76 39.5
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 3.4e-06 55.1 82 42.7
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 4.5e-06 54.7 48 54.2
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.5e-06 54.7 77 40.3
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 7.7e-06 53.9 66 42.4


User provided reference genes

Program Settings