Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 8.7e-165 583.6 293 100.0
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 1.3e-91 340.5 177 97.2
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 2.8e-91 339.3 170 99.4
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 1.4e-85 320.5 212 81.1
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 1.9e-82 310.1 201 82.6
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 8.9e-69 264.6 215 73.0
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.7e-56 223.8 174 77.0
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.9e-55 220.3 176 76.1
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.1e-54 216.9 176 74.4
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 5.8e-52 208.8 180 72.8
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.5e-47 193.4 174 69.0
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.0e-32 143.3 172 57.0
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 6.7e-32 142.1 175 51.4
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 8.7e-32 141.7 174 52.9
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 5.7e-31 139.0 174 51.1
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.4e-29 133.7 172 51.7
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 4.0e-29 132.9 174 50.6
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 9.0e-29 131.7 174 51.7
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.5e-28 131.0 172 51.7
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 1.5e-28 131.0 172 50.6
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 2.6e-28 130.2 172 50.0
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 3.4e-28 129.8 176 51.1
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 3.4e-28 129.8 172 51.7
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 4.5e-28 129.4 174 50.6
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 7.6e-28 128.6 174 51.1
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.3e-27 127.9 174 48.9
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 1.7e-27 127.5 174 48.9
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 3.8e-27 126.3 174 48.3
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.8e-27 126.3 175 48.0
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 6.5e-27 125.6 176 50.6
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 6.5e-27 125.6 174 50.0
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 1.1e-26 124.8 174 47.7
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.1e-26 124.8 174 46.6
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 1.4e-26 124.4 172 51.7
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.4e-26 124.4 175 49.1
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 1.9e-26 124.0 174 48.9
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.5e-26 123.6 172 50.6
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 4.2e-26 122.9 172 47.1
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.5e-26 122.5 171 50.9
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 9.3e-26 121.7 172 47.1
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.2e-25 121.3 174 46.6
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.6e-25 120.9 174 48.9
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.6e-25 120.9 172 50.6
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.6e-25 120.9 172 47.7
C02p34020 Brassica napus HOM05D003947 ORTHO05D098046 2.1e-25 120.6 67 91.0
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 2.1e-25 120.6 174 47.7
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 3.5e-25 119.8 175 46.9
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.6e-25 119.4 174 48.9
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 6.1e-25 119.0 174 47.1
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-24 118.2 169 50.9
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.3e-24 117.9 172 46.5
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 1.3e-24 117.9 172 49.4
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.8e-24 117.5 174 46.6
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.1e-24 115.9 174 48.3
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 5.1e-24 115.9 174 48.3
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 5.1e-24 115.9 176 46.0
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 6.7e-24 115.5 174 47.1
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 8.7e-24 115.2 178 45.5
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.5e-23 114.4 175 48.0
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.9e-23 114.0 175 45.7
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.3e-23 113.2 171 48.0
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 3.3e-23 113.2 178 45.5
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 3.3e-23 113.2 174 45.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 4.3e-23 112.8 171 47.4
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 5.7e-23 112.5 180 48.3
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 7.4e-23 112.1 172 47.7
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 7.4e-23 112.1 171 46.8
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 7.4e-23 112.1 174 45.4
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 9.7e-23 111.7 174 44.8
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 9.7e-23 111.7 195 43.1
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 9.7e-23 111.7 174 45.4
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 3.7e-22 109.8 179 45.3
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.1e-21 108.2 173 46.8
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.8e-21 107.5 176 47.2
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.8e-21 107.5 168 48.8
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 2.4e-21 107.1 176 46.0
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 3.1e-21 106.7 153 51.0
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 3.1e-21 106.7 172 45.9
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 9.0e-21 105.1 151 51.0
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.6e-20 103.6 176 44.3
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 2.6e-20 103.6 174 46.0
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 5.9e-20 102.4 179 40.2
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.9e-20 102.4 172 41.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.3e-19 101.3 171 42.1
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 1.7e-19 100.9 173 45.7
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 6.5e-19 99.0 172 43.0
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 8.5e-19 98.6 150 49.3
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 8.5e-19 98.6 148 50.7
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 8.5e-19 98.6 173 41.6
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.1e-18 98.2 176 40.3
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 2.7e-17 93.6 175 42.3
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 4.6e-17 92.8 181 41.4
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 6.1e-17 92.4 149 49.0
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 6.1e-17 92.4 174 39.7
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 7.9e-17 92.0 164 44.5
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 1.0e-16 91.7 151 46.4
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 3.9e-16 89.7 186 39.8
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 8.8e-16 88.6 176 38.6
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 8.8e-16 88.6 153 44.4
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 2.0e-15 87.4 159 40.9
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.5e-15 87.0 185 39.5
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 3.3e-15 86.7 149 45.0
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 4.3e-15 86.3 150 45.3
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 9.7e-15 85.1 178 37.6
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.3e-14 84.7 147 44.9
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.3e-14 84.7 151 40.4
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 2.2e-14 84.0 149 44.3
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 2.2e-14 84.0 152 43.4
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 4.8e-14 82.8 172 37.2
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 6.3e-14 82.4 171 36.8
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 6.3e-14 82.4 172 36.6
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 6.3e-14 82.4 147 44.9
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.8e-13 80.9 171 36.3
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 3.1e-13 80.1 171 37.4
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 4.1e-13 79.7 172 36.0
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 4.1e-13 79.7 180 37.2
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 5.3e-13 79.3 154 37.7
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 5.3e-13 79.3 213 35.2
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 5.3e-13 79.3 160 40.0
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 1.2e-12 78.2 185 36.8
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.2e-12 78.2 150 42.7
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 1.5e-12 77.8 153 41.8
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.0e-12 77.4 174 35.1
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 2.0e-12 77.4 174 38.5
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.0e-12 77.4 154 41.6
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 2.0e-12 77.4 152 40.8
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.4e-12 76.6 149 40.9
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 4.5e-12 76.3 157 40.1
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 5.9e-12 75.9 183 37.2
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 5.9e-12 75.9 166 36.7
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.0e-11 75.1 176 36.4
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.7e-11 74.3 175 36.0
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 2.9e-11 73.6 171 33.3
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 2.9e-11 73.6 110 44.5
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 6.5e-11 72.4 176 34.1
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 8.5e-11 72.0 161 36.6
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 1.4e-10 71.2 172 34.3
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 1.4e-10 71.2 106 46.2
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.5e-10 70.5 171 34.5
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 2.5e-10 70.5 175 37.1
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.2e-10 70.1 169 33.7
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 3.2e-10 70.1 172 32.6
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 3.2e-10 70.1 172 32.6
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.2e-10 70.1 89 47.2
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 3.2e-10 70.1 110 40.9
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 3.2e-10 70.1 148 42.6
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.2e-10 69.7 161 34.2
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 5.5e-10 69.3 171 38.0
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 5.5e-10 69.3 172 36.6
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 7.2e-10 68.9 182 36.8
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 9.4e-10 68.6 172 32.6
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 2.7e-09 67.0 183 33.9
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 3.6e-09 66.6 182 37.4
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 4.7e-09 66.2 149 37.6
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 6.1e-09 65.9 154 38.3
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 1.4e-08 64.7 174 36.2
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 1.4e-08 64.7 170 32.9
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 1.8e-08 64.3 175 32.6
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 2.3e-08 63.9 124 37.9
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 5.1e-08 62.8 170 32.4
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 8.8e-08 62.0 169 32.5
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 1.1e-07 61.6 152 38.2
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 1.5e-07 61.2 86 44.2
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 5.7e-07 59.3 162 35.2
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 7.4e-07 58.9 160 32.5
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 9.7e-07 58.5 159 35.2
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 1.3e-06 58.2 163 35.0
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 6.3e-06 55.8 153 30.1


User provided reference genes

Program Settings