Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 2.3e-24 114.8 58 100.0
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 5.2e-21 103.6 70 81.4
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 5.2e-21 103.6 70 81.4
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 6.8e-21 103.2 70 81.4
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 6.8e-21 103.2 70 81.4
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 6.8e-21 103.2 70 81.4
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 2.9e-19 97.8 71 78.9
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.1e-18 95.9 70 74.3
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 5.4e-18 93.6 70 71.4
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 5.4e-18 93.6 70 72.9
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 5.4e-18 93.6 70 72.9
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 5.4e-18 93.6 70 72.9
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 7.8e-17 89.7 69 73.9
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.3e-16 89.0 69 72.5
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.7e-16 88.6 69 71.0
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 5.0e-16 87.0 70 68.6
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 5.0e-16 87.0 68 72.1
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 5.0e-16 87.0 68 72.1
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 6.6e-16 86.7 65 70.8
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.5e-15 85.5 69 68.1
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 2.5e-15 84.7 65 70.8
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 2.5e-15 84.7 69 66.7
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.3e-15 84.3 65 70.8
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.2e-09 65.9 67 52.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.7e-09 64.7 60 56.7
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 2.7e-09 64.7 60 56.7
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.5e-09 64.3 60 56.7
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 3.5e-09 64.3 60 56.7
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.6e-09 63.9 67 47.8
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.6e-09 63.9 60 56.7
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 4.6e-09 63.9 67 50.7
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 7.8e-09 63.2 67 49.3
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 2.3e-08 61.6 65 49.2
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 2.3e-08 61.6 65 47.7
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 2.3e-08 61.6 65 47.7
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.0e-08 61.2 60 53.3
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 3.0e-08 61.2 67 47.8
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 3.9e-08 60.8 59 55.9
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 5.1e-08 60.5 59 54.2
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 8.6e-08 59.7 68 47.1
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 8.6e-08 59.7 65 50.8
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.1e-07 59.3 65 47.7
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.5e-07 58.9 65 49.2
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.5e-07 58.9 65 47.7
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.5e-07 58.9 65 47.7
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.5e-07 58.9 67 46.3
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 1.9e-07 58.5 65 49.2
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.5e-07 58.2 59 54.2
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.3e-07 57.8 67 44.8
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.3e-07 57.8 67 44.8
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.3e-07 57.8 67 44.8
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 4.3e-07 57.4 65 46.2
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.3e-07 57.4 68 44.1
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.3e-07 57.4 59 50.8
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 5.6e-07 57.0 65 46.2
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 5.6e-07 57.0 68 47.1
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.6e-07 57.0 59 54.2
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.6e-07 57.0 59 54.2
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 5.6e-07 57.0 60 53.3
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.3e-07 56.6 68 48.5
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.2e-06 55.8 67 41.8
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.2e-06 55.8 67 41.8
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.2e-06 55.8 56 51.8
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 2.1e-06 55.1 65 46.2
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.6e-06 54.3 68 47.1
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 3.6e-06 54.3 58 53.4
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.7e-06 53.9 65 47.7
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 6.2e-06 53.5 67 43.3
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 6.2e-06 53.5 65 44.6
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 6.2e-06 53.5 69 43.5
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 6.2e-06 53.5 59 49.2


User provided reference genes

Program Settings