Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 4.4e-49 197.6 97 100.0
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 2.3e-45 185.3 114 84.2
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 2.3e-45 185.3 114 84.2
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 3.3e-44 181.4 114 82.5
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 6.9e-42 173.7 114 78.9
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 6.9e-42 173.7 114 78.9
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 2.0e-41 172.2 114 78.1
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 7.1e-39 163.7 114 73.7
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.1e-34 149.8 109 71.6
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.1e-34 149.8 109 71.6
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 9.0e-34 146.7 109 69.7
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 1.3e-32 142.9 115 66.1
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 3.8e-32 141.4 105 72.4
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 6.0e-30 134.0 116 64.7
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 4.0e-26 121.3 122 57.4
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 1.5e-25 119.4 112 60.7
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 4.9e-24 114.4 93 66.7
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 5.1e-21 104.4 121 51.2
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 4.6e-14 81.3 63 66.7
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.3e-13 79.7 82 53.7
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 2.3e-13 79.0 62 66.1
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 3.9e-13 78.2 89 51.7
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 1.9e-12 75.9 81 53.1
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 3.3e-12 75.1 63 58.7
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 4.3e-12 74.7 68 57.4
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 5.7e-12 74.3 78 55.1
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 1.6e-11 72.8 77 50.6
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 2.2e-11 72.4 88 48.9
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 4.8e-11 71.2 65 61.5
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 8.2e-11 70.5 87 50.6
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 1.1e-10 70.1 91 45.1
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.8e-10 69.3 88 50.0
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 1.8e-10 69.3 63 58.7
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 2.4e-10 68.9 77 54.5
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 2.4e-10 68.9 91 47.3
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 3.1e-10 68.6 75 52.0
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 3.1e-10 68.6 89 44.9
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 6.9e-10 67.4 64 56.2
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 9.0e-10 67.0 99 43.4
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 9.0e-10 67.0 59 59.3
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.2e-09 66.6 85 45.9
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.2e-09 66.6 85 45.9
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 1.2e-09 66.6 67 52.2
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 1.5e-09 66.2 85 48.2
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 2.6e-09 65.5 45 71.1
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 2.6e-09 65.5 48 66.7
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 3.4e-09 65.1 84 45.2
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 4.5e-09 64.7 90 44.4
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 4.5e-09 64.7 82 50.0
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 5.9e-09 64.3 86 43.0
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 5.9e-09 64.3 78 48.7
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 5.9e-09 64.3 91 41.8
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 7.6e-09 63.9 78 48.7
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 7.6e-09 63.9 78 48.7
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 1.3e-08 63.2 75 46.7
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.3e-08 63.2 91 40.7
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.7e-08 62.8 100 42.0
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 1.7e-08 62.8 80 46.2
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.9e-08 62.0 91 40.7
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.9e-08 62.0 79 48.1
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 2.9e-08 62.0 57 56.1
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 2.9e-08 62.0 91 48.4
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 3.8e-08 61.6 51 60.8
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 3.8e-08 61.6 58 56.9
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 6.5e-08 60.8 57 54.4
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 6.5e-08 60.8 57 54.4
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 6.5e-08 60.8 57 52.6
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 8.5e-08 60.5 52 57.7
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 8.5e-08 60.5 59 52.5
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 1.1e-07 60.1 67 50.7
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 3.2e-07 58.5 77 42.9
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 9.3e-07 57.0 76 40.8
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 2.1e-06 55.8 67 47.8
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.6e-06 55.1 54 48.1
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.6e-06 55.1 54 48.1
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 4.6e-06 54.7 53 50.9
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 4.6e-06 54.7 53 50.9


User provided reference genes

Program Settings