Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 3.6e-172 608.2 320 100.0
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 5.7e-170 600.9 320 98.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 2.0e-159 565.8 327 91.1
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 6.8e-155 550.8 320 88.8
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 3.7e-153 545.0 320 87.5
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.0e-151 539.3 317 87.7
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 3.3e-149 531.9 317 87.1
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 4.3e-149 531.6 317 86.8
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.3e-147 525.8 314 87.3
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 3.1e-147 525.4 320 84.4
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 4.4e-146 521.5 316 85.8
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.2e-143 513.5 340 80.6
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.1e-139 500.4 320 81.6
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 9.9e-138 493.8 320 80.9
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 8.9e-131 470.7 330 74.8
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 4.3e-125 451.8 297 79.1
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.3e-116 423.7 311 68.8
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.1e-115 420.6 310 67.4
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.6e-114 416.0 311 68.2
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 2.6e-114 416.0 311 68.2
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 7.6e-114 414.5 310 68.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 8.4e-113 411.0 311 66.6
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 2.7e-111 406.0 315 66.3
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.9e-109 399.8 322 63.0
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 4.3e-109 398.7 310 64.5
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 7.4e-109 397.9 317 62.8
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 6.2e-108 394.8 305 64.6
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 8.1e-108 394.4 304 65.1
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.4e-107 392.9 306 64.7
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.1e-107 392.5 304 64.8
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 5.3e-107 391.7 305 63.6
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 5.3e-107 391.7 312 63.8
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 6.9e-107 391.3 304 65.1
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 9.0e-107 391.0 305 64.6
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.5e-106 390.2 304 64.1
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.8e-106 388.3 315 62.5
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.0e-105 387.5 304 63.5
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.0e-105 387.5 306 64.7
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.0e-105 387.5 305 63.3
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.3e-105 387.1 310 63.9
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.7e-105 386.7 305 64.3
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.2e-105 386.3 310 63.9
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 2.2e-105 386.3 305 63.3
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.8e-105 385.6 310 63.9
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.9e-105 385.2 310 61.9
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 4.9e-105 385.2 307 60.9
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 4.9e-105 385.2 304 63.8
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.1e-104 384.0 305 63.0
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 2.5e-104 382.9 307 61.2
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.5e-104 382.9 306 64.4
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.5e-104 382.9 304 63.8
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.2e-104 382.1 312 63.5
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 4.2e-104 382.1 310 62.9
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.5e-104 381.7 311 63.0
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.6e-103 380.2 310 61.0
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.6e-103 380.2 306 62.7
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.1e-103 379.8 305 63.9
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.5e-103 379.0 310 61.0
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 4.6e-103 378.6 309 60.2
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 4.6e-103 378.6 307 62.5
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 1.0e-102 377.5 307 60.6
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.0e-102 377.5 312 60.9
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.3e-102 377.1 321 61.4
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.3e-102 377.1 305 63.6
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.8e-102 376.7 308 61.4
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 3.9e-102 375.6 310 60.3
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 8.7e-102 374.4 307 62.5
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 8.7e-102 374.4 312 62.2
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 1.1e-101 374.0 307 61.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-101 373.6 332 59.6
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.9e-101 373.2 306 60.5
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.5e-101 372.9 311 60.5
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.5e-101 372.9 308 62.7
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 5.7e-101 371.7 263 69.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 9.6e-101 370.9 306 62.4
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 9.6e-101 370.9 315 61.3
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.3e-100 370.5 310 60.6
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.6e-100 370.2 334 59.9
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.6e-100 370.2 308 60.4
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 3.7e-100 369.0 327 59.0
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.7e-100 369.0 297 62.0
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 3.7e-100 369.0 307 61.2
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.1e-99 367.5 305 61.6
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.4e-99 367.1 307 60.9
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.8e-99 366.7 326 59.2
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.4e-99 366.3 307 62.2
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 2.4e-99 366.3 321 58.9
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.1e-99 365.9 262 69.1
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 3.1e-99 365.9 347 57.1
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.3e-99 365.2 373 53.9
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 9.0e-99 364.4 317 58.4
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.7e-97 360.1 308 59.4
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.2e-97 359.8 307 62.2
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 3.8e-97 359.0 310 64.8
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 6.5e-97 358.2 307 59.6
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.1e-96 357.5 342 56.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.2e-96 355.5 306 62.1
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 5.5e-96 355.1 308 58.8
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.2e-95 354.0 269 66.5
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 3.6e-95 352.4 264 67.4
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 4.6e-95 352.1 353 53.8
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 7.9e-95 351.3 263 66.2
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-94 350.1 263 65.8
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 2.2e-92 343.2 327 56.0
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 2.8e-92 342.8 287 61.7
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 4.1e-91 339.0 272 63.2
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.2e-90 337.4 311 55.6
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.2e-89 333.2 308 60.4
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.5e-89 331.6 308 57.1
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.1e-88 330.9 318 56.6
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-88 330.5 306 56.9
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 2.5e-88 329.7 174 98.3
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 9.4e-88 327.8 185 91.9
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.2e-87 327.4 204 81.9
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.8e-86 323.6 252 64.7
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.7e-86 321.6 309 54.4
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 8.8e-86 321.2 307 54.1
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.6e-85 319.7 302 53.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 5.7e-85 318.5 237 64.1
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.8e-84 316.2 308 53.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.8e-84 315.5 324 53.4
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 5.9e-82 308.5 313 54.6
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.9e-80 303.5 314 50.6
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 7.9e-79 298.1 233 62.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 6.3e-76 288.5 232 62.5
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.1e-75 287.7 226 65.5
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.0e-74 283.5 258 57.0
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.4e-72 274.6 305 49.2
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 8.0e-71 271.6 309 48.2
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.0e-66 256.9 302 48.0
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 5.5e-64 248.8 441 37.4
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.0e-63 245.0 192 65.6
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.2e-58 231.1 326 43.3
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 2.7e-58 229.9 311 44.4
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.7e-58 229.9 267 50.2
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.6e-57 224.9 152 71.1
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.6e-55 220.7 205 58.0
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.0e-54 218.0 173 65.3
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 5.7e-53 212.2 221 49.8
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 3.7e-52 209.5 172 63.4
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 8.6e-49 198.4 290 40.0
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.3e-48 196.1 225 47.1
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 9.5e-48 194.9 213 50.7
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.8e-46 190.7 147 63.9
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.2e-45 188.0 132 70.5
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.6e-45 186.8 233 47.2
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.7e-44 183.0 173 56.1
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 6.4e-44 182.2 140 64.3
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.1e-43 181.4 164 58.5
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.8e-43 180.6 192 47.4
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.2e-43 179.9 304 41.1
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.6e-41 171.8 193 50.3
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.4e-38 164.5 138 60.9
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.0e-37 160.6 149 57.7
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 8.3e-36 155.2 122 63.9
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.6e-34 151.0 117 65.0
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 6.6e-33 145.6 166 44.6
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 8.1e-31 138.7 106 66.0
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.9e-28 130.2 175 44.6
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 4.1e-27 126.3 113 59.3
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 2.4e-22 110.5 116 54.3
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-21 107.8 149 43.6
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.3e-16 90.1 125 37.6
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 2.8e-15 87.0 81 55.6
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 4.7e-15 86.3 81 53.1
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-14 85.1 53 73.6
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.4e-11 73.9 45 77.8
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 7.1e-11 72.4 90 43.3
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.5e-08 63.9 62 53.2
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 4.3e-08 63.2 79 43.0
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 7.3e-08 62.4 45 64.4
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 9.6e-08 62.0 62 51.6


User provided reference genes

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