Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06018 Brassica carinata HOM05D005517 ORTHO05D006760 6.6e-32 140.2 76 100.0
BcaC03g13514 Brassica carinata HOM05D005517 ORTHO05D006760 1.8e-29 132.1 76 93.4
BcaC03g13515 Brassica carinata HOM05D005517 ORTHO05D006760 1.8e-29 132.1 76 93.4
A02p02340 Brassica napus HOM05D005517 ORTHO05D006760 2.3e-29 131.7 76 93.4
BraA02t05205Z Brassica rapa HOM05D005517 ORTHO05D006760 2.3e-29 131.7 76 93.4
C02p06560 Brassica napus HOM05D005517 ORTHO05D006760 9.8e-28 126.3 76 92.1
BcaB01g06344 Brassica carinata HOM05D005517 ORTHO05D006760 4.9e-27 124.0 76 86.8
BcaB08g36959 Brassica carinata HOM05D005517 ORTHO05D006760 8.3e-27 123.2 76 86.8
BcaC03g13513 Brassica carinata HOM05D005517 ORTHO05D006760 1.4e-26 122.5 74 89.2
AT5G14105 Arabidopsis thaliana HOM05D005517 ORTHO05D006760 1.9e-26 122.1 77 88.3
BcaC04g19059 Brassica carinata HOM05D005517 ORTHO05D006760 3.2e-26 121.3 76 84.2
C09p63000 Brassica napus HOM05D005517 ORTHO05D006760 3.2e-26 121.3 76 84.2
BolC9t59138H Brassica oleracea HOM05D005517 ORTHO05D006760 3.2e-26 121.3 76 84.2
Carub.0006s1230 Capsella rubella HOM05D005517 ORTHO05D006760 4.1e-26 120.9 77 85.7
A10p24320 Brassica napus HOM05D005517 ORTHO05D006760 7.0e-26 120.2 76 82.9
BraA10t44498Z Brassica rapa HOM05D005517 ORTHO05D006760 7.0e-26 120.2 76 82.9
CARHR199240 Cardamine hirsuta HOM05D005517 ORTHO05D006760 2.0e-25 118.6 76 85.5
Aa31LG11G14910 Aethionema arabicum HOM05D005517 ORTHO05D006760 3.9e-24 114.4 76 78.9
Potri.017G066388 Populus trichocarpa HOM05D005517 ORTHO05D006760 5.6e-23 110.5 73 75.3
Ciclev10017370m.g Citrus clementina HOM05D005517 ORTHO05D006760 9.5e-23 109.8 76 73.7
Sabra17G0058600 Salix brachista HOM05D005517 ORTHO05D006760 9.5e-23 109.8 73 74.0
THA.LOC104803813 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 4.7e-22 107.5 76 72.4
Potri.001G328100 Populus trichocarpa HOM05D005517 ORTHO05D006760 4.0e-21 104.4 73 72.6
Atru.chr6.2589 Acer truncatum HOM05D005517 ORTHO05D006760 5.2e-21 104.0 76 69.7
Manes.15G162502 Manihot esculenta HOM05D005517 ORTHO05D006760 8.9e-21 103.2 73 69.9
Cpa.g.sc70.124 Carica papaya HOM05D005517 ORTHO05D006760 2.0e-20 102.1 73 69.9
Duzib187G1036 Durio zibethinus HOM05D005517 ORTHO05D006760 3.4e-20 101.3 76 72.4
Glyma.19G093900 Glycine max HOM05D005517 ORTHO05D006760 3.4e-20 101.3 73 71.2
CiPaw.03G057500 Carya illinoinensis HOM05D005517 ORTHO05D006760 4.4e-20 100.9 73 69.9
Glyma.16G054600 Glycine max HOM05D005517 ORTHO05D006760 4.4e-20 100.9 73 72.6
Duzib264G0094 Durio zibethinus HOM05D005517 ORTHO05D006760 7.5e-20 100.1 76 71.1
Thecc.04G039500 Theobroma cacao HOM05D005517 ORTHO05D006760 7.5e-20 100.1 76 71.1
Gohir.D04G075800 Gossypium hirsutum HOM05D005517 ORTHO05D006760 2.2e-19 98.6 76 71.1
TWI74G0054 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 2.2e-19 98.6 73 69.9
TWI74G0227 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 2.2e-19 98.6 73 69.9
Duzib147G1371 Durio zibethinus HOM05D005517 ORTHO05D006760 2.9e-19 98.2 76 69.7
GSVIVG01028670001 Vitis vinifera HOM05D005517 ORTHO05D006760 3.7e-19 97.8 73 64.4
TAR371G1004 Trochodendron aralioides HOM05D005517 ORTHO05D006760 6.4e-19 97.1 74 66.2
Aa31LG5G11080 Aethionema arabicum HOM05D005517 ORTHO05D006760 8.3e-19 96.7 74 68.9
Gohir.A07G229900 Gossypium hirsutum HOM05D005517 ORTHO05D006760 8.3e-19 96.7 68 73.5
Gohir.D07G237100 Gossypium hirsutum HOM05D005517 ORTHO05D006760 8.3e-19 96.7 68 73.5
Gorai.001G273000 Gossypium raimondii HOM05D005517 ORTHO05D006760 8.3e-19 96.7 68 73.5
TAR629G2363 Trochodendron aralioides HOM05D005517 ORTHO05D006760 1.4e-18 95.9 73 67.1
Nn3g16415 Nelumbo nucifera HOM05D005517 ORTHO05D006760 1.9e-18 95.5 74 66.2
Phvul.001G091300 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 1.9e-18 95.5 73 65.8
Ca_26962_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 2.4e-18 95.1 73 71.2
COL.COLO4_13282 Corchorus olitorius HOM05D005517 ORTHO05D006760 2.4e-18 95.1 76 68.4
CANSAT64G1159 Cannabis sativa HOM05D005517 ORTHO05D006760 4.1e-18 94.4 72 66.7
arahy.Tifrunner.gnm1.ann1.3828X0 Arachis hypogaea HOM05D005517 ORTHO05D006760 9.2e-18 93.2 73 69.9
Aqoxy1G01489 Aquilegia oxysepala HOM05D005517 ORTHO05D006760 1.2e-17 92.8 73 60.3
Lalb_Chr05g0214841 Lupinus albus HOM05D005517 ORTHO05D006760 1.6e-17 92.4 73 67.1
Lj1g0000511 Lotus japonicus HOM05D005517 ORTHO05D006760 2.1e-17 92.0 73 68.5
QL10p050767 Quercus lobata HOM05D005517 ORTHO05D006760 2.1e-17 92.0 68 67.6
Eucgr.H04420 Eucalyptus grandis HOM05D005517 ORTHO05D006760 2.7e-17 91.7 73 67.1
Thhalv10021865m.g Eutrema salsugineum HOM05D005517 ORTHO05D006760 3.5e-17 91.3 79 68.4
CDE08G1355 Ceratophyllum demersum HOM05D005517 ORTHO05D006760 4.6e-17 90.9 73 57.5
MBI06_g06692_MAGBIO Magnolia biondii HOM05D005517 ORTHO05D006760 4.6e-17 90.9 76 63.2
Lalb_Chr16g0380111 Lupinus albus HOM05D005517 ORTHO05D006760 6.0e-17 90.5 73 65.8
CiPaw.04G038900 Carya illinoinensis HOM05D005517 ORTHO05D006760 7.8e-17 90.1 69 66.7
AUR62006995 Chenopodium quinoa HOM05D005517 ORTHO05D006760 7.8e-17 90.1 72 62.5
ClCG05G013610 Citrullus lanatus HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 65.8
Migut.F00052 Erythranthe guttata HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 67.1
QL02p071008 Quercus lobata HOM05D005517 ORTHO05D006760 7.8e-17 90.1 64 68.8
RcHm_v2.0_Chr1g0371371 Rosa chinensis HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 67.1
RcHm_v2.0_Chr7g0186891 Rosa chinensis HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 67.1
TWI34G0084 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 71.2
TWI34G1158 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 71.2
AUR62000640 Chenopodium quinoa HOM05D005517 ORTHO05D006760 1.3e-16 89.4 69 63.8
Cc03_g13370 Coffea canephora HOM05D005517 ORTHO05D006760 1.7e-16 89.0 74 60.8
FvH4_5g10930 Fragaria vesca HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 67.1
FAN08G0577 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 67.1
FAN13G3313 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 67.1
FAN18G2496 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 67.1
TWI60G0382 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 71.2
CSS0012820 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 5.1e-16 87.4 73 64.4
MELO3C014894.2 Cucumis melo HOM05D005517 ORTHO05D006760 5.1e-16 87.4 73 64.4
Dinv25651 Davidia involucrata HOM05D005517 ORTHO05D006760 5.1e-16 87.4 73 61.6
Os05g0517800 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 5.1e-16 87.4 74 59.5
PSO302G0245 Papaver somniferum HOM05D005517 ORTHO05D006760 5.1e-16 87.4 74 63.5
Prupe.5G129500 Prunus persica HOM05D005517 ORTHO05D006760 5.1e-16 87.4 73 65.8
Hund07167 Selenicereus undatus HOM05D005517 ORTHO05D006760 5.1e-16 87.4 74 55.4
Solyc04g009570.3 Solanum lycopersicum HOM05D005517 ORTHO05D006760 5.1e-16 87.4 73 61.6
Zm00001eb293020 Zea mays HOM05D005517 ORTHO05D006760 5.1e-16 87.4 74 60.8
EL10Ac4g09777 Beta vulgaris HOM05D005517 ORTHO05D006760 6.6e-16 87.0 72 65.3
Ca_14034_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 6.6e-16 87.0 69 63.8
Cc10_g16370 Coffea canephora HOM05D005517 ORTHO05D006760 6.6e-16 87.0 74 62.2
EL10Ac7g18130 Beta vulgaris HOM05D005517 ORTHO05D006760 8.6e-16 86.7 74 58.1
Medtr7g028755 Medicago truncatula HOM05D005517 ORTHO05D006760 8.6e-16 86.7 73 63.0
Psat6g022360 Pisum sativum HOM05D005517 ORTHO05D006760 1.5e-15 85.9 73 64.4
Hund05668 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.5e-15 85.9 74 63.5
HPP92_000894 Vanilla planifolia HOM05D005517 ORTHO05D006760 1.5e-15 85.9 74 55.4
CAN.G473.115 Capsicum annuum HOM05D005517 ORTHO05D006760 1.9e-15 85.5 73 60.3
CsaV3_3G026940 Cucumis sativus L. HOM05D005517 ORTHO05D006760 1.9e-15 85.5 73 63.0
Sopen04g004730 Solanum pennellii HOM05D005517 ORTHO05D006760 1.9e-15 85.5 73 60.3
PGSC0003DMG400032535 Solanum tuberosum HOM05D005517 ORTHO05D006760 1.9e-15 85.5 73 60.3
vmacro22457 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 1.9e-15 85.5 73 58.9
Hma1.2p1_1057F.1_g252720 Hydrangea macrophylla HOM05D005517 ORTHO05D006760 2.5e-15 85.1 76 57.9
Psat5g229880 Pisum sativum HOM05D005517 ORTHO05D006760 2.5e-15 85.1 73 63.0
SEGI_12962 Sequoiadendron giganteum HOM05D005517 ORTHO05D006760 2.5e-15 85.1 73 57.5
MD06G1118400 Malus domestica HOM05D005517 ORTHO05D006760 3.3e-15 84.7 76 60.5
Phvul.009G125500 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 3.3e-15 84.7 52 80.8
Dinv33325 Davidia involucrata HOM05D005517 ORTHO05D006760 5.6e-15 84.0 73 60.3
HanXRQChr02g0035131 Helianthus annuus HOM05D005517 ORTHO05D006760 5.6e-15 84.0 73 57.5
Sabra16G0209900 Salix brachista HOM05D005517 ORTHO05D006760 5.6e-15 84.0 56 73.2
MD14G1126500 Malus domestica HOM05D005517 ORTHO05D006760 7.3e-15 83.6 74 59.5
Medtr3g007670 Medicago truncatula HOM05D005517 ORTHO05D006760 7.3e-15 83.6 74 62.2
PGR142G3118 Punica granatum HOM05D005517 ORTHO05D006760 7.3e-15 83.6 51 82.4
Rhsim08G0041900 Rhododendron simsii HOM05D005517 ORTHO05D006760 7.3e-15 83.6 72 59.7
Nitab4.5_0007375g0080 Nicotiana tabacum HOM05D005517 ORTHO05D006760 9.5e-15 83.2 73 58.9
TPR.G30072 Trifolium pratense HOM05D005517 ORTHO05D006760 9.5e-15 83.2 73 57.5
Lsat_1_v5_gn_1_29421 Lactuca sativa HOM05D005517 ORTHO05D006760 1.2e-14 82.8 73 57.5
Oeu063019.1 Olea europaea HOM05D005517 ORTHO05D006760 1.2e-14 82.8 69 62.3
PSO210G3561 Papaver somniferum HOM05D005517 ORTHO05D006760 1.2e-14 82.8 74 58.1
Sopen02g038880 Solanum pennellii HOM05D005517 ORTHO05D006760 1.2e-14 82.8 73 58.9
PGSC0003DMG402020250 Solanum tuberosum HOM05D005517 ORTHO05D006760 1.2e-14 82.8 73 58.9
Peaxi162Scf00420g00633 Petunia axillaris HOM05D005517 ORTHO05D006760 1.6e-14 82.4 73 57.5
THA.LOC104814182 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 2.8e-14 81.6 127 41.7
ECA232G0857 Erigeron canadensis HOM05D005517 ORTHO05D006760 3.6e-14 81.3 73 56.2
Rhsim10G0005200 Rhododendron simsii HOM05D005517 ORTHO05D006760 3.6e-14 81.3 73 56.2
CSS0038475 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 1.1e-13 79.7 72 56.9
Lsat_1_v5_gn_4_78980 Lactuca sativa HOM05D005517 ORTHO05D006760 1.4e-13 79.3 72 55.6
arahy.Tifrunner.gnm1.ann1.9JMW1H Arachis hypogaea HOM05D005517 ORTHO05D006760 2.4e-13 78.6 50 80.0
Haze_14891 Corylus avellana HOM05D005517 ORTHO05D006760 2.4e-13 78.6 51 76.5
HanXRQChr16g0497941 Helianthus annuus HOM05D005517 ORTHO05D006760 2.4e-13 78.6 73 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2988 Anthoceros agrestis HOM05D005517 ORTHO05D006760 2.0e-12 75.5 74 60.8
TPR.G36037 Trifolium pratense HOM05D005517 ORTHO05D006760 6.4e-11 70.5 50 66.0
Mapoly0055s0070 Marchantia polymorpha HOM05D005517 ORTHO05D006760 8.4e-11 70.1 74 52.7
Peaxi162Scf00064g01122 Petunia axillaris HOM05D005517 ORTHO05D006760 4.1e-10 67.8 51 62.7
Pp3c1_33450 Physcomitrium patens HOM05D005517 ORTHO05D006760 9.2e-10 66.6 68 48.5
Os03g0733000 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 4.6e-09 64.3 75 50.7
Prupe.2G009500 Prunus persica HOM05D005517 ORTHO05D006760 4.6e-09 64.3 73 56.2
vmacro05969 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 1.3e-08 62.8 54 57.4
Cc02_g28320 Coffea canephora HOM05D005517 ORTHO05D006760 2.3e-08 62.0 59 54.2
Pp3c14_7680 Physcomitrium patens HOM05D005517 ORTHO05D006760 1.5e-07 59.3 58 51.7


User provided reference genes

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