Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 6.2e-219 763.8 390 100.0
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 4.8e-187 657.9 395 87.1
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 3.1e-186 655.2 385 87.8
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 5.3e-186 654.4 394 84.3
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 7.0e-186 654.1 385 87.3
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 1.2e-182 643.3 387 86.8
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 1.4e-162 576.6 391 76.0
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 5.0e-144 515.0 427 65.6
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 2.5e-143 512.7 441 63.3
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 3.6e-142 508.8 440 63.0
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 1.0e-128 464.2 449 56.8
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 4.0e-117 425.6 447 53.2
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 9.6e-95 351.3 389 50.1
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 2.4e-93 346.7 402 49.3
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 2.9e-91 339.7 440 44.5
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 5.0e-91 339.0 444 43.9
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 6.5e-91 338.6 452 44.7
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 8.4e-91 338.2 445 46.5
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 8.4e-91 338.2 450 43.6
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 4.2e-90 335.9 435 45.5
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 7.2e-90 335.1 426 46.7
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 1.2e-89 334.3 437 43.5
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.6e-89 334.0 462 43.3
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 2.1e-89 333.6 457 44.4
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 7.9e-89 331.6 434 45.6
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 1.0e-88 331.3 439 45.3
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 1.8e-88 330.5 444 44.1
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.1e-87 327.8 472 43.6
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.5e-87 327.4 462 43.1
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 1.9e-87 327.0 365 47.9
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 5.7e-87 325.5 437 44.6
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 7.4e-87 325.1 456 41.9
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.3e-86 324.3 429 44.3
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.2e-86 323.6 431 44.3
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.2e-86 323.6 433 45.3
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 3.7e-86 322.8 452 43.6
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 6.3e-86 322.0 397 46.6
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 8.2e-86 321.6 428 44.6
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 1.8e-85 320.5 462 43.1
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 2.4e-85 320.1 451 43.0
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 4.1e-85 319.3 446 43.7
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 2.0e-84 317.0 430 44.0
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.8e-83 312.8 420 43.8
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 3.8e-83 312.8 440 43.9
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 5.0e-83 312.4 464 40.1
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 1.4e-82 310.8 418 44.3
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 3.2e-82 309.7 459 42.7
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 2.7e-81 306.6 434 43.8
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 2.7e-81 306.6 434 43.8
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 3.6e-81 306.2 424 42.5
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 4.6e-81 305.8 436 41.7
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 3.0e-80 303.1 452 40.0
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 8.8e-80 301.6 484 39.0
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 4.8e-78 295.8 399 44.9
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 1.1e-77 294.7 443 40.4
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 3.1e-77 293.1 448 39.7
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 4.1e-77 292.7 465 39.8
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 4.1e-77 292.7 429 41.7
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 4.5e-76 289.3 436 40.6
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 1.3e-75 287.7 449 40.5
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.7e-75 287.3 436 42.0
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 2.9e-75 286.6 447 40.5
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 8.5e-75 285.0 439 40.5
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 1.1e-74 284.6 478 38.1
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 1.4e-74 284.3 427 39.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.5e-74 283.5 429 41.7
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 2.5e-74 283.5 402 42.0
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 7.2e-74 282.0 458 39.3
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 7.9e-73 278.5 407 41.5
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 1.4e-72 277.7 430 38.6
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.0e-72 276.6 443 40.9
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 5.1e-72 275.8 439 39.4
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 1.5e-71 274.2 158 81.0
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 1.7e-70 270.8 428 39.3
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 8.2e-70 268.5 394 42.1
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 4.1e-69 266.2 411 41.8
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 5.3e-69 265.8 449 38.1
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 9.1e-69 265.0 432 39.1
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 7.2e-66 255.4 394 39.8
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 6.7e-64 248.8 473 35.7
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 2.2e-62 243.8 419 38.9
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 8.2e-62 241.9 418 37.6
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.0e-59 235.0 241 56.8
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 5.5e-58 229.2 542 30.6
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.6e-57 227.6 277 48.4
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.4e-56 224.6 194 55.7
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 1.2e-55 221.5 429 35.9
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 3.4e-55 219.9 453 35.3
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.8e-54 216.9 230 50.0
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 4.8e-54 216.1 224 50.0
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.6e-52 211.1 221 50.7
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 2.5e-50 203.8 172 62.2
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 4.2e-50 203.0 409 34.0
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.0e-47 194.1 141 59.6
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 7.5e-47 192.2 325 39.4
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 9.8e-47 191.8 444 33.8
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 1.8e-45 187.6 156 57.1
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 5.4e-45 186.0 464 31.5
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.0e-44 184.1 143 58.0
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 7.7e-44 182.2 372 33.6
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.1e-41 174.1 330 38.2
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 4.4e-39 166.4 327 37.6
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 4.9e-38 162.9 130 57.7
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.4e-37 161.4 486 26.7
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.7e-36 157.1 130 57.7
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.5e-36 156.8 189 42.9
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.5e-36 156.8 189 42.9
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.1e-33 147.5 164 49.4
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.7e-33 146.4 164 49.4
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 6.2e-33 146.0 163 43.6
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 5.2e-32 142.9 189 44.4
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 1.1e-29 135.2 174 47.1
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 4.1e-29 133.3 117 49.6
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 1.2e-28 131.7 278 34.9
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 2.7e-28 130.6 165 46.1
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.9e-26 124.4 154 46.1
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 3.3e-26 123.6 163 44.8
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.1e-25 120.9 202 39.1
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 2.1e-25 120.9 159 37.7
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.9e-22 110.5 163 43.6
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 8.3e-22 109.0 134 47.0
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 1.9e-21 107.8 140 34.3
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 2.7e-20 104.0 155 41.9
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 6.0e-20 102.8 148 41.9
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 7.3e-18 95.9 101 50.5
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.6e-17 94.7 117 42.7
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 1.6e-17 94.7 261 31.4
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.6e-17 94.7 95 48.4
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 5.8e-15 86.3 115 43.5
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 1.3e-11 75.1 205 29.3
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.8e-08 64.7 179 29.6
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 4.0e-08 63.5 49 59.2
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.7e-06 58.2 71 39.4


User provided reference genes

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