Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1355.9 704 100.0
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1309.7 704 96.2
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1305.4 704 95.7
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1305.4 704 95.7
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1303.1 704 95.6
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1303.1 704 95.6
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1268.4 705 92.9
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1238.8 707 91.7
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1238.8 707 91.7
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 0.0e+00 1234.2 705 90.8
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1230.7 705 90.9
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1230.7 705 90.9
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1177.5 705 87.2
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1166.0 705 86.5
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 0.0e+00 1161.4 705 86.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 0.0e+00 1122.8 730 81.1
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1112.1 707 81.3
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1104.4 705 81.7
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 9.6e-303 1043.1 706 77.6
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.9e-298 1028.9 707 77.5
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.1e-277 959.9 697 72.0
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 1.6e-273 946.0 692 71.0
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 6.1e-273 944.1 709 70.2
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.8e-272 942.6 696 69.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 3.0e-272 941.8 702 69.7
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 5.1e-272 941.0 706 72.2
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 5.1e-272 941.0 709 70.2
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 8.8e-272 940.3 701 69.2
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.5e-271 939.5 702 69.5
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.3e-271 938.3 703 72.7
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 8.2e-270 933.7 707 68.3
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.4e-269 932.9 699 68.7
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 4.1e-269 931.4 707 67.8
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 6.9e-269 930.6 725 68.1
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 2.0e-268 929.1 693 69.1
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 2.6e-268 928.7 707 71.7
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 2.6e-268 928.7 707 71.7
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 2.2e-267 925.6 696 68.5
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.9e-267 925.2 696 68.7
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 5.0e-267 924.5 699 68.8
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 5.0e-267 924.5 697 68.7
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 5.0e-267 924.5 707 68.2
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.2e-266 921.8 696 68.5
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.2e-265 919.8 696 68.5
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 2.1e-265 919.1 707 67.3
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 2.3e-264 915.6 705 67.1
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 3.0e-264 915.2 698 67.5
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 6.7e-264 914.1 702 67.7
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 4.4e-263 911.4 708 68.5
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 6.3e-262 907.5 695 68.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 6.3e-262 907.5 690 68.4
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 6.3e-262 907.5 717 67.1
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 8.2e-262 907.1 707 69.0
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-261 906.7 672 72.8
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.1e-261 906.7 702 67.5
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.1e-261 906.7 710 66.8
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 1.8e-261 906.0 697 67.0
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.4e-261 905.6 715 67.0
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.2e-260 903.3 697 67.0
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.6e-260 902.9 715 66.9
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 2.0e-260 902.5 703 67.4
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-258 896.3 694 66.9
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.5e-258 896.3 708 66.0
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 2.5e-258 895.6 692 67.6
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.2e-258 895.2 703 67.0
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 9.4e-258 893.6 702 66.4
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 6.1e-257 891.0 695 67.2
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 1.0e-256 890.2 706 67.0
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 5.2e-256 887.9 718 65.6
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.2e-255 886.7 691 67.1
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.0e-255 885.9 695 67.2
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.7e-254 882.9 712 64.6
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 6.3e-254 880.9 705 69.4
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 4.5e-252 874.8 687 67.1
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 7.7e-252 874.0 716 64.0
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.0e-251 873.6 747 63.5
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 2.9e-251 872.1 714 64.1
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 8.5e-251 870.5 707 65.1
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.5e-250 869.8 708 65.8
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.5e-250 869.8 712 64.2
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 5.5e-250 867.8 703 64.7
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 4.7e-249 864.8 726 63.5
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.0e-248 863.6 703 65.3
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.0e-248 861.7 712 63.3
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 3.7e-246 855.1 678 65.3
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.1e-245 852.0 691 64.1
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 4.1e-245 851.7 708 63.0
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 4.1e-245 851.7 693 64.1
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.7e-243 846.3 693 63.6
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.0e-243 844.7 701 62.9
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 5.5e-242 841.3 625 69.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 7.2e-242 840.9 708 64.1
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 9.5e-242 840.5 711 64.3
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.8e-241 839.0 711 64.0
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.4e-240 836.6 709 64.0
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 5.2e-240 834.7 705 63.7
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 8.3e-238 827.4 703 63.0
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.4e-237 826.6 696 63.1
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 2.4e-237 825.9 721 61.0
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.0e-235 820.5 698 61.5
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.0e-231 806.2 707 62.2
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 4.1e-229 798.5 692 62.9
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.0e-227 793.9 694 61.1
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 8.6e-227 790.8 481 84.4
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 6.2e-225 784.6 715 59.9
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 8.1e-217 757.7 769 54.9
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.2e-215 753.8 640 63.0
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 8.3e-214 747.7 713 57.1
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 2.4e-213 746.1 692 57.7
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 4.1e-213 745.3 692 59.0
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 4.3e-210 735.3 708 56.6
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 4.2e-205 718.8 605 62.1
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 9.6e-186 654.4 695 51.7
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.1e-185 653.3 564 63.7
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 7.9e-180 634.8 696 50.0
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 5.1e-179 632.1 701 51.1
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.4e-176 623.2 474 67.7
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.6e-172 610.5 482 65.6
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.0e-171 606.3 710 48.0
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 8.7e-171 604.7 706 48.6
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.2e-169 600.1 474 65.2
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.8e-160 570.5 689 47.0
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.9e-150 536.6 607 48.1
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.9e-149 533.9 388 72.7
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 4.4e-138 496.1 707 43.3
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 5.9e-127 459.1 392 62.5
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 1.0e-102 378.6 474 48.5
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 3.9e-102 376.7 328 59.1
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 4.9e-97 359.8 688 34.3
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.5e-74 285.0 698 30.4
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 5.4e-72 276.6 812 29.1
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.6e-66 257.7 227 64.3
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.4e-48 198.7 173 58.4
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.3e-44 185.7 227 49.8
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 7.7e-42 176.4 425 34.4
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.1e-35 154.5 193 48.2
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-34 152.1 169 52.1
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 2.9e-33 147.9 197 46.7
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.4e-30 139.0 106 67.9
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 7.0e-27 126.7 102 59.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.5e-26 124.0 138 49.3
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.5e-24 119.0 80 72.5
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 9.4e-24 116.3 227 41.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.8e-17 94.4 98 48.0
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 1.0e-14 86.3 172 34.9
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 6.8e-14 83.6 70 60.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 8.8e-14 83.2 95 44.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.8e-13 79.7 74 58.1
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 4.9e-12 77.4 73 56.2
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 4.9e-12 77.4 73 56.2
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 6.3e-12 77.0 79 51.9
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 1.1e-11 76.3 88 46.6
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 2.4e-11 75.1 67 56.7
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 3.1e-11 74.7 73 54.8
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 3.1e-11 74.7 56 66.1
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.7e-10 71.6 66 54.5
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 4.5e-10 70.9 122 36.1
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.3e-09 69.3 63 57.1
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 3.8e-09 67.8 66 57.6
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.9e-08 65.5 76 47.4
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 3.3e-08 64.7 73 53.4
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 2.3e-06 58.5 55 50.9
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 4.0e-06 57.8 57 56.1


User provided reference genes

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