Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 2.7e-152 542.0 274 100.0
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 2.7e-152 542.0 274 100.0
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 2.1e-144 515.8 274 96.0
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 1.0e-135 486.9 278 89.9
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 1.0e-135 486.9 278 89.9
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 1.5e-134 483.0 282 88.3
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 3.7e-133 478.4 278 88.8
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 5.9e-131 471.1 276 86.2
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 1.0e-130 470.3 282 87.2
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 1.3e-130 469.9 278 87.1
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 1.1e-129 466.8 278 85.6
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 1.4e-127 459.9 281 85.4
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 2.3e-127 459.1 282 84.4
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 2.3e-127 459.1 282 84.8
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 3.9e-127 458.4 271 85.6
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 2.0e-126 456.1 282 83.7
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 1.6e-112 409.8 283 76.7
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 4.4e-110 401.7 278 77.0
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 1.7e-109 399.8 290 71.0
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 5.2e-95 351.7 293 64.2
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 5.2e-95 351.7 293 62.8
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 1.2e-94 350.5 293 62.8
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 3.4e-94 349.0 278 71.2
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 1.4e-92 343.6 294 60.2
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 9.2e-92 340.9 294 61.9
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 1.2e-91 340.5 293 61.8
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 1.0e-90 337.4 294 61.6
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 3.8e-90 335.5 287 61.3
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 1.9e-89 333.2 294 59.2
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 7.3e-89 331.3 283 62.5
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 1.6e-88 330.1 317 57.4
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 6.1e-88 328.2 294 60.5
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 1.0e-87 327.4 294 59.9
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 1.8e-87 326.6 295 59.0
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 5.2e-87 325.1 294 59.5
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 1.5e-86 323.6 294 60.2
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 1.5e-86 323.6 294 59.9
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 2.0e-86 323.2 293 58.4
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 4.4e-86 322.0 296 56.1
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 7.5e-86 321.2 294 56.8
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 7.5e-86 321.2 293 59.4
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 7.5e-86 321.2 292 57.5
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 9.8e-86 320.9 293 57.7
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 2.9e-85 319.3 284 58.1
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 8.3e-85 317.8 306 54.9
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 8.3e-85 317.8 294 57.8
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 1.1e-84 317.4 293 57.7
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.1e-84 317.4 293 57.7
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 3.2e-84 315.8 294 53.7
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 4.1e-84 315.5 282 58.5
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 7.0e-84 314.7 294 57.1
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 9.2e-84 314.3 292 58.9
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 9.2e-84 314.3 293 57.0
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 1.2e-83 313.9 289 57.8
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 1.6e-83 313.5 295 56.3
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 2.7e-83 312.8 291 58.1
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 3.5e-83 312.4 294 56.5
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 1.0e-82 310.8 292 57.5
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 3.9e-82 308.9 293 56.3
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 5.0e-82 308.5 291 56.7
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 6.6e-82 308.1 282 56.7
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 8.6e-82 307.8 289 57.8
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 1.1e-81 307.4 279 58.1
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 1.5e-81 307.0 295 57.6
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 2.5e-81 306.2 287 57.8
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 7.3e-81 304.7 292 57.2
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 2.1e-80 303.1 296 55.1
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 6.2e-80 301.6 282 56.4
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 1.4e-79 300.4 351 47.6
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 4.0e-79 298.9 286 57.3
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 4.0e-79 298.9 295 54.9
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 1.5e-78 297.0 292 55.8
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 1.5e-78 297.0 292 55.1
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 3.4e-78 295.8 286 54.9
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 3.4e-78 295.8 295 54.9
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 7.5e-78 294.7 290 53.1
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 9.8e-78 294.3 294 54.4
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 1.3e-77 293.9 294 52.7
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 1.3e-77 293.9 282 52.8
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 1.7e-77 293.5 291 55.0
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 1.7e-77 293.5 282 55.0
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 2.2e-77 293.1 285 54.4
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 1.4e-76 290.4 290 53.4
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 5.4e-76 288.5 299 53.2
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 5.4e-76 288.5 294 54.8
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 7.0e-76 288.1 277 56.3
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 7.8e-75 284.6 288 53.8
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 1.0e-74 284.3 280 52.5
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.5e-73 280.4 287 54.0
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 2.6e-70 269.6 288 51.4
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 5.8e-70 268.5 301 48.2
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 9.9e-70 267.7 301 48.2
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 3.2e-68 262.7 280 50.0
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 3.5e-67 259.2 290 49.3
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 4.1e-60 235.7 261 51.0
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 9.2e-60 234.6 192 66.1
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 3.5e-59 232.6 207 61.4
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 1.2e-54 217.6 222 55.9
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 9.9e-54 214.5 255 46.3
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 2.9e-53 213.0 291 44.3
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 3.9e-50 202.6 264 46.6
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.6e-48 197.2 188 55.3
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 4.0e-47 192.6 189 54.0
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 8.1e-40 168.3 199 49.2
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 1.4e-39 167.5 243 40.3
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 6.9e-39 165.2 170 57.6
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 7.4e-33 145.2 241 43.6
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 1.6e-32 144.1 105 66.7
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 5.7e-25 119.0 107 57.0
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 2.8e-24 116.7 300 28.3
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 1.9e-20 104.0 120 51.7
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 1.9e-20 104.0 254 30.3
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 7.2e-20 102.1 94 57.4
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 4.6e-19 99.4 132 47.7
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 4.6e-19 99.4 132 45.5
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 1.0e-18 98.2 110 47.3
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 6.7e-18 95.5 132 43.9
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 6.3e-16 89.0 60 68.3
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 8.2e-16 88.6 57 68.4
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 1.4e-15 87.8 120 43.3
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 3.4e-14 83.2 120 41.7
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 1.7e-13 80.9 135 41.5
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 6.5e-13 79.0 58 62.1
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 1.9e-12 77.4 59 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3866 Anthoceros agrestis HOM05D006244 ORTHO05D007401 4.8e-08 62.8 125 35.2


User provided reference genes

Program Settings